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54-4331-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26448576 [Map]; Strand: w
      • AT5G66170.3 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: exon5 (CDS)
      • AT5G66170.1 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: exon5 (CDS)
      • AT5G66170.2 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: exon5 (CDS)
      • AT5G66180.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -362; Region: promoter
      • AT5G66180.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -363; Region: promoter
      • AT5G66180.3 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -379; Region: promoter
    Flanking Genome Sequence: 54-4331-1 - 5-prime edge
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TCTGCTAATT AATAATCTTA AGATTCTNTN
    CTTTTCTTAA TCAAATAATA TAACTGCCTG NGTGATGTAG TAATCATTNN
    CAATTTAAAA TTCCAGNTTC TTGTNNTCAA AACATTTCGN GNACCAAATT
    CAATAAAAGC ATGTGTTTCT CTATAAGTGA AAACCAGAAA AAAAANNATG
    ACCANNNAAA NGGGTAAAAC CTANGNANCA NNCCTTNGTT NGTTNNNTNG
    GCNAAANCGT TGGGNCTTTT NGNGTNTNCN NNCAAAANGG CTTGGGGCTT
    AANCCNAANC CNTNNTTTTT TTNGTTNTCN CCNGGGNATT NTCCNANTNA
    NTNANTTTTC CNACCNAACN CTTTTTTTTT TTTNTGGGGT TTNTNNGGGA
    AAAANCGNCC AANCTNCNGT NCCNGGANNG TTNCNTTACC TNCNNANNGG
    NAANGGGCCT NGANCCTTNA NTNTNTCCNC NNGGAAATTN ANTNCCNCNT
    TTTGNAGGGN ANCTGGAANC CCCNCNTTNG TTTTTNTAAA ANTTTNNNAN
    TTGGGCTTNN AANCCGGANA GGCCCGTTGN AGGGTGNAAC CCTGNATTCG
    AGGANGCTTT CAAANANATG GAATCCNAAT TTACCTGTAA CCNGGAAAGG
    GGGAATNGGT TNCCAGGATT TTCCCCNTCC CTCCAAATGT TNATTTNNCC
    AAACCANGGC CTNTNANNAN GGCTNGGGGA GANAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26448565 [Map]; Strand: w
      • AT5G66170.3 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: exon5 (CDS)
      • AT5G66170.1 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: exon5 (CDS)
      • AT5G66170.2 - [+] show detail - sulfurtransferase 18
        Distance: 0; Region: exon5 (CDS)
      • AT5G66180.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -373; Region: promoter
      • AT5G66180.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -374; Region: promoter
      • AT5G66180.3 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -390; Region: promoter
    Flanking Genome Sequence: 54-4331-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    NCTCCTNCTT GTCAGATGGG AAAGCTGTGA TNCACCCANG CCAAGTAGCC
    ACCTNCCACG TNTNTCACTT TCTTGTNACC CTATNTNTNN TGGTATATAT
    GAATTGATTC TTTGAGATTA AACACACAAG TAGGTGTAAA TTATGTATGT
    AAACTAGGGG ACTATTATAC ACTTACTGCA GCAACAAGTT CAGTTGTGGC
    TTTTAAGGAT CTGGCTCCAC TCTGACAACC CTGTTTGTAT CAATATCATT
    TTCCAGATTT TATCATCGTT TTCACCAGCA GATTTTAATT CTTGTGGGTG
    TGATGAGGAA GAAAAGAGTT ACCACAAGGA TATCATCAGC TGGGTTTAGA
    AGAGAAGATA CTTGCTCCAA GAACTCTTGA TTTTTCACTC TACCTAAGAG
    TAGAGATCAC AAGGCTTTAA CTCATGTACT GGTTGATATC TCTAATTAAA
    GGTGATTGAT ATTTGATTTA CCTTGAGGTG TGTTGAGCAT GTAGGGAATG
    TTGACGATCT TAGCTGCCTC ACAATGGCCT CTCCTAAACT CGTCCTGAGT
    CCTGCCATGT GCAAGGATTT TTCATTAACA ACCGCAACAG CTGGTACATG
    CATGGTGATA TGATAGAATA GATCAGAAGC TCACCTAACG TCAAGATATT
    GATGCCCAGA CTGGANGAGA GTCTTGGCTT GGCTCACATC TACACTAACA
    ACTTCTTCTG CCTTTGTGCT GGANGAGATT GATTGAA

AT5G66170.1

Model type
Protein coding
Short Description
sulfurtransferase 18
Curator Summary
Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description
sulfurtransferase 18 (STR18); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1); Has 200 Blast hits to 200 proteins in 47 species: Archae - 2; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66170.2

Model type
Protein coding
Short Description
sulfurtransferase 18
Curator Summary
Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description
sulfurtransferase 18 (STR18); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1); Has 1280 Blast hits to 1276 proteins in 450 species: Archae - 27; Bacteria - 889; Metazoa - 24; Fungi - 9; Plants - 170; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66170.3

Model type
Protein coding
Short Description
sulfurtransferase 18
Curator Summary
Encodes a thiosulfate sulfurtransferase/rhodanese.
Computational Description
sulfurtransferase 18 (STR18); FUNCTIONS IN: thiosulfate sulfurtransferase activity; INVOLVED IN: aging; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G17850.1).
Link
InterPro Scan - TAIR

AT5G66180.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8827 Blast hits to 7075 proteins in 2181 species: Archae - 455; Bacteria - 6424; Metazoa - 542; Fungi - 251; Plants - 202; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66180.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 2637 Blast hits to 2540 proteins in 1031 species: Archae - 209; Bacteria - 1812; Metazoa - 180; Fungi - 59; Plants - 92; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66180.3

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8458 Blast hits to 6982 proteins in 2152 species: Archae - 444; Bacteria - 6084; Metazoa - 538; Fungi - 249; Plants - 190; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link
InterPro Scan - TAIR