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54-4346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3118980 [Map]; Strand: w
      • AT3G10113.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G10114.1 - [+] show detail
        Distance: -511; Region: promoter
    2. Chromosome: 1; Position: 6307133 [Map]; Strand: w
      • AT1G18330.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT1G18330.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-4346-1 - 5-prime edge 
    TGTACAGCGG TTTTTGTACC TATGTGTTCT GCAGCAAAAT CAAGACTTAG 
    GTTCTTCAGA ACTACATCTA ATAGCAGCTA GATTCTAAGC TCAATTTAAG 
    CTCCAAGTCA AATAATACCT TGGATTTGAC GCCAACCACG ACCATAAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3118864 [Map]; Strand: w
      • AT3G10113.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT3G10114.1 - [+] show detail
        Distance: -627; Region: promoter
    Flanking Genome Sequence: 54-4346-1 - 3-prime edge 
    GCTGTACAGA TACGAAGCCA TGCTCAAAAG TTCTTCTCCA AGGTCTTGTT 
    TGTTCATATG TTCCATAACA TCAGTAGTAC TGATTTGGTT AGTTTGTAAC 
    CTGACAGTTT TTTATCCATT GCAGATGGCT CAGGAAGCTG ACAGTAGAAG 
    TGAAGGATCG GTTAAAGCGA TTGTGATCCC GCCTCCTCGT CCAAAGAGAA 
    AACCGGCACA TCCTTATCCT CGGAAATCGC CTGTTCCATA TACTCAGTCT 
    CCTCCACCAA ATTTGTCAGC TATGGAGAAA GGAACCAAGT CTCCAACCTC 
    AGTGTTATCA TCGTTTGGTT CAGAGGATCA AGTCAATAGA TGCTCTTCGC 
    CTAATTCGTG TACCAGTGAC ATCCAATCCA TTGGTGCAAC TTCCATTGAT 
    TAAAAGAATA ACTACACAAC ATCCAAGCAA CCTTTCAAAG ATGATTCTGA 
    CATTGGTTCA ACACCCATTT CAAGCATTAC TCTTTTCGGG AAGATTGTCC 
    TTGTCGCGGA AGAATCTCAC AAACCATCCT CTTACAATGA TGATGATCTT 
    AAACAAATGA CGTGTCAGGA GAATCACTAC TCAGGGATGC TAGTTGACAC 
    TAATTTATCT CTTGGTGTAT GGGAAACGTT TTGTACTGGT TCTAATGCAT 
    TTGGCTCGGT TACAGAAGCA TCTGAGAACT TGGAGAAGAG TGCAGAGCCG 
    ATAAGTTCTT CATGGAAACG GNTAAG

AT1G18330.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
EARLY-PHYTOCHROME-RESPONSIVE1
Computational Description
EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10113.1); Has 1461 Blast hits to 1443 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 30; Plants - 1113; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18330.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
EARLY-PHYTOCHROME-RESPONSIVE1
Computational Description
EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G10113.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10113.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G18330.2); Has 1478 Blast hits to 1458 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 1117; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR