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54-4358-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107868 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4358-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCT AGGCATCTCG TTTGTCCGGG CTGATCTCAA 
    ACCCGGATCC ATTAACCCAC CACATTACCA TCCGCGGGCG ACGGAAGTAG 
    CCCACTTGGT TAAAGGACAG GGTTTACTCT GGTTTTGTGG ACTCGAACAA 
    TAAGGTTTAC GCGTAAAGTG ATGGAAGAAG GAGAAATGAT GGTTTACCCA 
    AAAGGGCTTG TACATTTTCA GATGAACGTC GGAGATGTTA CGGCCACGAT 
    TGTCGGCGGA CTTANTAGCC AAAACCCTGG NATTCAGAAG ATACNGTCCG 
    GGGTTTTNGG GTAAAGGATC NNTGAGGATT NGGTNATGNN AGCTTNTGGG 
    TTGANTCTTA AGCNCATTGG GGNGNAGAAT NAANCACTTG ATCCCGNGGA 
    GAANAANAAA NTTGNGGNGG NANGTCGNNA NAANAAANAA GGANNNNNTN 
    NNANGGGGGN NNGNNAATAN NNCCCCCCNN NCNTTTTTNN GAANAGGGAA 
    ANAGNNNNNC CANAAANNNN NNNNTTNTTT TTTTTTNNNG GGACCNANGC 
    GANGGTNAAT NTAAAAAANA NAAAATGNNG CGGGGNNNNT GATTNANNAN 
    CACCNATNCN CNTTNGGAGG GGGGATTATN AAAAAAAANN CANCNNGGGG 
    GGGGGANNNN NGANNNNTNN AANTTTAAAA ANTNNNNCCC CAANNNCAAA 
    ANATNTNNNA NNNNNNNCCN NNNTTTNTGG GANAANGGGG TNGGNGGGTA 
    AAAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3107882 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4358-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCATAA TATGTATTAA 
    GGCCGGGGAA GTTTTCTGGG CCTACTGGGA CGGTGGCGAA CCCCGTCTCC 
    GTGAAGTTTC CGGCAGTTTT TAGACCGGAA AAGACAAAAT CTTCGGTGGT 
    TACTTCGGAG GAGTTTTTGC AAGGGAGATT GGTGGAGAAG TGATGGTCAT 
    GGTAAGGAGA TGTCACAGGT TTTGGTATGC AGAAGTCTTG GATGGGATCA 
    GGGTCGGAAG CTAATGTGAA GCATACATTA AAACAAAGAA GACAAAGAGC 
    TTTTANAAGA AACAAAGTGT TTGCTTCCAT TTTACTTGAG GTCCATGTGA 
    ANAANAGTTG TGTTACATCG GTTTAAATAT TCATATGTAT ATCTGGTGGG 
    GGTAAATTAN AGACTGGGGN NNATGGTNAC TANTTTTTNN TNCTNCNATT 
    NANTCANNAA AATTNANGNN NANNGTNGGG GGGGGNAAAA NAANAACCGG 
    GNTNAAANTG TTTTTTTTTT TTAAACNCCA ATTTTTTTNA NAAAANAAAN 
    NGGTGGNGTT TTTTTTNNCC CNTNNGGAAA NCCCCNNNTN NNNGTTTNTT 
    TTTTTTTTTT TTAGGGGTAN NTTTTTTNTN CCNNNATTTT TTNAAAAAAA 
    AANCCCTTNT TGGGGGTTTN AAAAAAACNN NNTANAANNC TTCNTCTNTT 
    TTTTNTTT

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR