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54-4359-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26501652 [Map]; Strand: w
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -850; Region: promoter
    Flanking Genome Sequence: 54-4359-1 - 5-prime edge 
    CCCACAAGTG AATGTGTCGC TGAATATATT GTCGCAGGGA TCGACGGAGA 
    AATCCCAAGA ACTCAGGCAA GAGCCTGGAC TCATGGATTT GGCATCCACT 
    GAGTTCTTGA AGTCTTTGAG AGCNTGCCAC NGTCACCCCA GAAAGTCTTG 
    GACTCTGCTG AAGATAAAGT GAGCAAAAGA AGAAGAACAA GGGAAATAAG 
    TGAAGCCATT ACAAAAGAGA GATGGTTAGC TCTGCTGAGA GATGTTTGGA 
    AGAAGAAGAA GCAGAGTGGG TTTGGAGTGA ATAATGACCG TTGGATGAGA 
    GGGTCAAGGC GTGTGATAGA TCTACTGAAA GTTGCTCTGA AACTTGAAAG 
    ACAGAGGAAT TTATATATAG AGAGATTGAG ATATTAAAAT AGATAGTGTA 
    AATTTATATC ATGTGTGTCA TTGTCCATCA GACATATGCG TGAAGACAAC 
    AACATCTGTA CAGTGAGGTG TGGTTGGCCC TATCCCCATC CACCATAACT 
    CAGAGGTTAT GAGTTTGAGA TTCTGTTGAG ATTCCAAAGC AGAACAACTC 
    TTGATTTANG ATTATTTGAC ATATTACCAA TTCACATGTC ATAAATTGAC 
    TAATAAACTT TACAATTTAT TTCATTTTCT CCCATATGTG ACGTACCCAT 
    TTGACCAGAA GTTGTCAAAA TCTAAACTAG TCTTGGTTGA TGACATAGAT 
    AGAANAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26501536 [Map]; Strand: w
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66340.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -966; Region: promoter
    Flanking Genome Sequence: 54-4359-1 - 3-prime edge 
    CTTGTGGGTT CCGCTGCGAC TCCGTCGTTA CCGGATCGGG TCGGGTCACG 
    GAGCTCAGTC TGGACCAAGC CGGTTACTCA GGCTCCCTCT CCTCCGTCTC 
    TTTCAACCTT CCTTATCTCC AGACCCTCGA TCTCTCCGGC AACTACTTCT 
    CCGGTCCACT TCCCGACTCG CTCTCCAATC TCACCCGTCT CACCCGCCTC 
    ACTGTGTCCG GAAACTCCTT TTCCGGATC

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66340.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR