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Mutant Lines
54-4378-1

54-4378-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 28159940 [Map]; Strand: w
  - AT1G74970.1 - [+] show detail - ribosomal protein S9
    Distance: -638; Region: promoter
  - AT1G74990.1 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 54-4378-1 - 5-prime edge
```
TTGGCATGGC AGCAAAACTT GAATGCCCAC CAAAGAAACT AGACCCATGA 
TGTCTTTGTT CAAGACGAGG TCGAGCTGTT TCAGTCCTAG TCGCAGCTGG 
TCGATTAGGG ACAGTAACAC CACTATTGAG TTTCGATCTC GGATCAGAAG 
ATGGCTTACC CATTCCATAC AAAGGAACCA AAGTATCTTC CTTAACCAAA 
GCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 28159861 [Map]; Strand: w
- AT1G74970.1 - [+] show detail - ribosomal protein S9
  Distance: -559; Region: promoter
- AT1G74990.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon2 (CDS)

GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTGGT 
TTACGGTTTT CAAACTTCTT GTTGTAATGG AAAGTATCTT TTGATGAATC 
TGAGTCTGTT TTTTTGACAA TGTTTTTGAA ACTATTATTA TACATTGTCT 
ACGATTTTTG TTATTTTGAC AATTAATGTT TAGAGCTACA TTTACATTCT 
TATAAAAAAT TTGCATCTGC TTGTAATATT TGATTCTCCA ATCTTCCGCT 
TTGTGAAAAA TCGTCATAAG CT

AT1G74970.1

Model type: Protein coding
Short Description: ribosomal protein S9
Curator Summary: ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
Computational Description: ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G74990.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 4144 Blast hits to 4137 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 2459; Fungi - 476; Plants - 747; Viruses - 18; Other Eukaryotes - 444 (source: NCBI BLink).
Link: InterPro Scan - TAIR