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54-4386-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107318 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4386-1 - 3-prime edge 
    AAAAAAANNN NNNNNNNNNN NNNNNNNNNN NNNNAAAAAA AAAAAANTAA 
    AAAANGGNGT CNTTAGGGNG AAGGAGGTGA NAATNNTNGA CCGGGNCCNN 
    CCGTCTCCAT CCCNNTCAGC AAAAGGATCC AACATCNGAN CGAAAACATG 
    GAATCCGGCA CTNACACGCG NTCCCAAAAN ATCCNNCNAC TGTNATNANC 
    NNGCTCATTA NAANGNNNGC GCATANNAGA TCTGGCCNTC CCCNCGAGAN 
    GGGCGAATNG CNGTNCCTGC CCNNCCTNNA TGGGGANTCG AAACTNNACT 
    GTGTACCATN ACTTTTTTGT AAATCCACTN NNNATGAAAT TGACGTCCNN 
    CTGGTGTCCG ANAGGCTNGG GTCGCTCGAA TAATCTCGTC CAANAGACTA 
    ATACGGCTCT NGGGAACACN GNCTNTACAT GTGGGGGGAT CTAAACNNGA 
    AATCAGTNAT TNCCTCATTC GCANTCCNTC TGGGGTNNGC ANTTTCTCNT 
    ATNATCTGAT NCTTNANGGA TGGCCGGGCC AGNCCNTCGC ATCNCCNGAG 
    CGGGGGGAAG CANCCGNGNG CGCTCACNNN CCNNGAAAAA NCCCCGGGGC 
    NGGNGGACGA ACGCCAAGCC CCCNTNCNGA NGNCNACCCG CNGGNANAAA 
    CATCGGTGCG NGNNACNCTC CCGCCCGGGA NGAGCNACGG CCCNNNTCCN 
    NNGCNCACNN CCGCGCGCCC NCGCGGGGGC GNGGGGACAC NACAAGGGGA 
    GGNNTCNGCA ACNNCGNACC NGANCNAGNA NANNCNAGGG NCNAANAAGC 
    ANACAAGGCN AAAATNAGAG GGGGGGNNGG GNGCGGGNAC CAACCGCTCN 
    ANGGNGCGAG NNNNGNNGNN GNNCANGNNN GGTNTNNGGG ANNNNNNGNA 
    AANAAAAAAA AAAA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR