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54-4392-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23530302 [Map]; Strand: c
      • AT5G58140.2 - [+] show detail - phototropin 2
        Distance: 0; Region: exon23 (3UTR)
      • AT5G58140.1 - [+] show detail - phototropin 2
        Distance: 0; Region: exon23 (3UTR)
      • AT5G58140.3 - [+] show detail - phototropin 2
        Distance: 0; Region: exon22 (3UTR)
      • AT5G58150.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4392-1 - 5-prime edge
    GNGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATACTTGTGT ACCGCCGATC TGCCATGGAA
    GCGACCTACG ATGCAGCAGG TGGTTGGACT TCTCAAAGAC ATTTCTCCCA
    ACTACTAGTG GGCTAGTTAT GGGCCTCATA ATGGGCNTTA TCACACNTTA
    ACATGAATAT TAACATGGCT CTTAAGTTTG TATGTTTATT GTTTTTGATT
    AGAAGAAATG GAAAAACATG AAAAGAGCCG TTTATATTTA AGCAACTACA
    AGTACAACAA CACCTTGGCT TTTATTGAGA AGAAGAGTTT TGCATAATTT
    GAGAATCAAA GGCAGAGAGA GGAAGAATAG GATTAGAAGA GGTCAATGTC
    CAAGTCCGTA GAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23530307 [Map]; Strand: c
      • AT5G58140.2 - [+] show detail - phototropin 2
        Distance: 0; Region: exon23 (3UTR)
      • AT5G58140.1 - [+] show detail - phototropin 2
        Distance: 0; Region: exon23 (3UTR)
      • AT5G58140.3 - [+] show detail - phototropin 2
        Distance: 0; Region: exon22 (3UTR)
      • AT5G58150.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4392-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTATCTTCAC CGCCTCCGCG ATTTCATCCT CCGGAACTGT CTCTTGCATC
    GTCGGATCAA TGGCTCTCAA TCCTTGTCCC TGCCTCACCA ACCCTCTCAC
    CCAATTCACC AAGTCACCCT CCGGCTTCTT CCCACTCACG AGCTCAAGCA
    AAACAACTCC AAAGCTATAC ACATCGGATT CTAATGTCGG AGAAGCATTT
    CGCTCCTGTT CCGGTGGTGT GTACCCGTCT AAACTTTCGG AACCGGGAAA
    TTGCTCGTCC AAGAGTTTAA CTAAACCAAA GTCTGCTAAG CGTGGCTCCT
    GGCTAGAGTC TAACAAGATT GTTGCAGCCT TCACTTCTCC GTGGACCATT
    GGAGGAATGC AGCCATGGTG AAGGAAAGCT AATGCCCTCG CTGTCCCCAA
    AGCTATCTTA TGCCGAAGTC TCCAAGGTGC AGAATCATCT CCGTTGTTAT
    GGAGTAGACT TTGCAAATTA ACCATGTCTA AGTCCTCGTA GATTGCAATT
    CTTTGCTCTG TCGCTATACA GTATCCACAG AGCGGGAAAA GATTTGGGTG
    ATTGATCCTA GCGAGACGTT CAAATGCAAT CGAGACTTCA GTATCAGTCA
    ATGTGGTTCC ACTTGGGATA ACTTTTAGAG CTGCTCTGAA TCCACCGGGT
    AAGACTGCTC CGTAAGTAGG ACCAGACTTG CCTTNCCACA ACATTGTGCC
    TCTGTCGAAG TTGAAAGTCG C

AT5G58140.1

Model type
Protein coding
Short Description
phototropin 2
Curator Summary
Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description
phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116748 Blast hits to 111792 proteins in 3621 species: Archae - 310; Bacteria - 19900; Metazoa - 40386; Fungi - 12616; Plants - 24323; Viruses - 447; Other Eukaryotes - 18766 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58140.2

Model type
Protein coding
Short Description
phototropin 2
Curator Summary
Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description
phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116857 Blast hits to 111891 proteins in 3634 species: Archae - 310; Bacteria - 19970; Metazoa - 40401; Fungi - 12638; Plants - 24325; Viruses - 447; Other Eukaryotes - 18766 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58140.3

Model type
Protein coding
Short Description
phototropin 2
Curator Summary
Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description
phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116115 Blast hits to 111145 proteins in 3570 species: Archae - 310; Bacteria - 19809; Metazoa - 40204; Fungi - 12201; Plants - 24204; Viruses - 440; Other Eukaryotes - 18947 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58150.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G24230.1); Has 123029 Blast hits to 76063 proteins in 2552 species: Archae - 68; Bacteria - 12544; Metazoa - 35496; Fungi - 3406; Plants - 61900; Viruses - 119; Other Eukaryotes - 9496 (source: NCBI BLink).
Link
InterPro Scan - TAIR