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54-4406-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1284855 [Map]; Strand: w
      • AT5G04500.1 - [+] show detail - glycosyltransferase family protein 47
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-4406-1 - 5-prime edge 
    GTTTTCNNTA ACGAGCTGGC CACTTTGNGG AGAAAANTAC GGCAAAAGGA 
    TACGTGTCNN CTAAGATNGA AGTNCTTTCC AAGGAAGAGN ACANANAANG 
    TGAAGTCCCT TTCTCTTTGG AAGCGTCNCT GTAAAGGTAA AAATTCTTGG 
    AACGGGGGCT AGGCANCATC ATTNTGATGT GAAACACCGT NANNTCTGGA 
    GAATTCATTG GTCTNGTTGA TGGCGACCGT NTGACTNCNG GCGATCNGTT 
    TCATCGGGTT ATTCTTGGTT ATGCCTCACT TGCANCTGCT ATTNCCNTTG 
    NTATCTTACT TGGCTTTTTG CCTTGGGGTT GTGAACTNGC ATTGNTCCAT 
    CAACCTGGNG TGTGAACTAC TATGCGGGGA AAANAACCGA TNCGCTCCTG 
    AATCTNGAAA CTGNNGGTTT GTTCTCNGAA AAGTTAAGAC GGANTGGNTC 
    TCGCTTGAAC CGAGTACCGC CTTTTCTCAG AGGATNCGTG AAGCCTAATT 
    CCTCCATGGG GAAATTTACG CTCNGTGTTN TNGTCATTTT AAGACTTTGG 
    CTCACATGTG TAGGCGTGNG ANACATCTAC CGTNGAAGCG GAGCCCNTTG 
    AGCCTTATCC ATTCAAAGGT CACTTGTCTN AGTNTACCNT NNCNNCTNTG 
    ACTTAGGATG CTCGNCCCCT GGANTCTGNA AATGTNCGGA AAGCGGTACT 
    CTCGGNGNCC NTNCGGTTAA AGNANANATT TGGGNTATGG GANAAANGGA 
    CCGCCTTCCT GACCCNGNCC NGGGCTTAAC TCCCCCGGTN CCCAAAAANA 
    NNCAANAATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107302 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4406-1 - 3-prime edge 
    GNNAAAANGN GGNGNNGGNN GNNAAAGGGN NNNNNNAAAA AAAAAATAAA 
    AAAAAGNNTC NTTANGGAAC NAGAGNAAAT TTTGNCCGGG GCCAACCGTT 
    TTCATCCCTT TCTGCGGATG GATTCNCTTC TCTCGAACAC CTGGAATCTG 
    GCACTTCCAC CGCTCCCAGA TGATCCTCCT CTCTTATTAT TTGATTCATT 
    ATNGGGNTTT TCNTTTTGAT TTGGCCGTCG CCGNGAGATN GTGANTGGNG 
    TCGCTACATA CTGTATGTGT NTNCAAAACT CTACTTNTTC CATTNCTTTT 
    TNGTGGATCC CCTCTTCGTG AGATNGACGT TTNTCTGGNG TCCNAGAGGC 
    TTGGGTCGCT CGANTCNNCT CGTCCACTAG ACNAATACGG CTCTGGTGAC 
    CGCGGGGTTC ACNTGNNAGT GGTCNCGCCT GAGGNCANCG ANNGCNGTAN 
    NCGGCGGCNT NCNGGGGGTG NGCAGGGGGC GCTGGNCCNC CGGNGGNGGN 
    NGATGGGCNN GNGCCGCNNG NCNCGCNCGN GGGCNTGGGC NNGGGGGGGG 
    GGGNGCCCNG GGGGTGGGGG GCGCGNNGGG GCNGCNCCGG GGCCCGCNNG 
    ANCAACGCGG CGGACCCTGG GGGGGNNCNC GGGGGGGGGG GGCCGNNGGG 
    CCCCCCCGNG GNGCNGCNCN CNCGNGGNGA GCCCGGGGGG GGCNCCNNNC 
    GNGGGNGGGA CGGGAGNGCN NGGNNGGGGC GCNCGTGGGG AAAGGCGCGC 
    CGCCCGGNGG CNGAGGGGGC GNGGGCCNNG NGGGGGCGGG GTGACGCCCN 
    GCGCNCCCCG GNGGGGGGNG GGCGGGNGNG GNGGCGGGGA GGGGGGCGGN 
    CCCCCGGNCC GGCGCNGGGG GCGNNGNGGC GCGGTCAAAA AGAGAAAAAA 
    AANAAAAAA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04500.1

Model type
Protein coding
Short Description
glycosyltransferase family protein 47
Curator Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational Description
glycosyltransferase family protein 47; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: embryo, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 971 Blast hits to 969 proteins in 180 species: Archae - 4; Bacteria - 178; Metazoa - 489; Fungi - 8; Plants - 111; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Link
InterPro Scan - TAIR