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54-4409-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23190272 [Map]; Strand: c
      • AT3G62700.1 - [+] show detail - multidrug resistance-associated protein 10
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 54-4409-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGG CTTTGGCAAT GCTCTATTGT TCTTCCGAAT 
    GCTTTGATTT TTTGGTTAAA AAAAGTCTTT TAAAACTCTC TGCTCGATAT 
    TTGGATTAAT TTAGTTTTAA ACCCTAAATA CCAGGAAAAT TAATTATACA 
    GGTATATGAA ACCAACATAC NTTCATGTAT GAAACTAAAA GACTTAACTA 
    TCTTTCGAAA ATATGTCGAC CAATCTAGAC TCTAGAACAT AAACCGTAAG 
    CCAAAGATGA GCAATTCGAA CATTAGGAAA AAATGTAACT AGAGTTGATT 
    CGATTTAGAT ATACGAGACT TACGACTGGT CATAATGTAG TCAGTGTTGA 
    TTCAATCAGA ATCTTGAGAA AAGATTCTGA AAATACATAG AAAGGAGCTC 
    AATTTTGGTC GGCAGAGATT CCGTACTGAA CATTCCGACG AAATAAAACG 
    ATGTTAACAA GTATCATTTC TATCTTTTAA CGCTTTTCTT TTTCTGCACA 
    TTATCCGGTT TTGGATTAGA TCAAATATAC TTATAATTAA TCTTTTGTGG 
    TTTCACTATC GATAGATTTT ATTGATCCAC ACACAAAAGT TACTCTTTCC 
    TTTTTCCTCA CGGCTTGTTT GTTAGGTCAC GGGATTTAAA TTTGGATCAC 
    TGCGGCGATT ACGTGCATGA CGCTATCGGA ACATATAAAA GAAATAAACT 
    GTTTTTTTGT CCATTATTTC ACCAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19927808 [Map]; Strand: c
      • AT5G49152.2 - [+] show detail
        Distance: 0; Region: exon12 (NonCoding)
      • AT5G49150.1 - [+] show detail - gamete expressed 2
        Distance: 0; Region: exon12 (CDS)
    Flanking Genome Sequence: 54-4409-1 - 3-prime edge 
    TTTTCCTNGN NACGACCNAC NGTTGTTTAA TGNTCCTCAN TCTATAATGC 
    TGGANAGTAC TGGGAGTNAG TCACTTATAT TTCACCCCGA ANGAGACAAG 
    TNCAACTTCT NACTTGGAGA TCCNCATCAC CATGCCNGGG CCGAATANNA 
    CGCCNCTTNN GTGNNGTTNC ATGTNTTACA TNNGATGCCN CAGANGGATG 
    AGAGANACNN NTTNCNTGTN TGTTTNNTTC NCANCCCTCT NCGTNTTTNN 
    TNNTGNTGNN GTGTTNNAGG ATCACTTTCT TTATCAACNC NACGNCTGNC 
    TNTNGCGGGC GTATCAATNN GACTAACCGN TGTGATACCA NNCNGTGGAN 
    TGNNTCNCCN GACTTTTTTT NTTATGGGNA CCCACCCCAG ANTTAGGGTG 
    CTTTGTTNNA NAAACCACCA GANAGAANNA TATGTTNNCC CACCTTANNT 
    TCNTTNCTTN GCGANNGGNA CNAAATNCTT NTANTAGAAC TNTNAAAGGN 
    NCNANAAAGA GGGTNTTCNC TNNCCNGGNG NAAAAAGNGG NTGGNCNNAA 
    ATNTTAAAAA NNNCGNGGNN NTTNTGNNNN ACANAGNGGG NCCACCCNNN 
    ACCTTTCTTT NNNNTCCCCN CCCCANTATA AANNNAAACT NTGNNNNNGG 
    TNTCCCTCTN NNNGCGGCGN AAAAAAAAAA ANTGNGGCGN NAAAAAANTA 
    NTTNNNTNNN TNTANNCTCC NCCCCCCCCN CNTNTTGAAT NGTGGTTGAA 
    AAANACAAAA AAANCNNTNT NGNGNNGTNC CCNCCNNGGC AAAACTTATN 
    TCCCTCCCNG NNNNNAAAAA AAAANNAAAA AAACGTCTCC CCCCNNCNTT 
    TTTTTNGNTN TCNCCCATGN GAAAAAAAAA ANNGGNNNG

AT3G62700.1

Model type
Protein coding
Short Description
multidrug resistance-associated protein 10
Curator Summary
member of MRP subfamily
Computational Description
multidrug resistance-associated protein 10 (MRP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 4 (TAIR:AT2G47800.1); Has 708251 Blast hits to 364353 proteins in 4024 species: Archae - 13144; Bacteria - 571430; Metazoa - 13503; Fungi - 8752; Plants - 6721; Viruses - 16; Other Eukaryotes - 94685 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49150.1

Model type
Protein coding
Short Description
gamete expressed 2
Curator Summary
Encodes a transmembrane domain containing protein expressed in sperm cells.
Computational Description
gamete expressed 2 (GEX2); CONTAINS InterPro DOMAIN/s: Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49152.2

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G49150
Link
InterPro Scan - TAIR