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54-4435-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24459244 [Map]; Strand: c
      • AT5G60790.1 - [+] show detail - ABC transporter family protein
        Distance: -3274; Region: intergenic
      • AT5G60800.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 1539; Region: intergenic
    Flanking Genome Sequence: 54-4435-1 - 5-prime edge 
    CGACATCCCA TTCAATATTA GTTAACTAAT AATACATGCA TGAACATGTG 
    TTTGAGAATT TTGTGATCAT GATACGGGGT GCTTCATGCA TCATCATGAT 
    GATGATCATC ATACATGTTA GTTTGGAAGT CCAACNTTTC TTTTCTAGGA 
    AAGTTACATT CGAGTTCGAG GAAACTAATG GATTTATAGA TAAATCTCAT 
    AGAAAAGTAA CNTTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24459322 [Map]; Strand: c
      • AT5G60790.1 - [+] show detail - ABC transporter family protein
        Distance: -3352; Region: intergenic
      • AT5G60800.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 1461; Region: intergenic
    Flanking Genome Sequence: 54-4435-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    AAACGCACAT GCACAATAAA AACATGAATA CGACGACTAT ATTGATGTTA 
    ATATAAATTT CTTATTAATG CCTAAATTTT CTACAAGAAA TAAAGAAATA 
    AATTTTGGCT TTACGTTACC ATAAAAGAGT AAAAGGAAAT AAATGGTAAT 
    GTGTGCATTG ATGTCATGGG TTGGCATTCA CTATATGTTG ACTTACCTAT 
    CGAATT

AT5G60790.1

Model type
Protein coding
Short Description
ABC transporter family protein
Curator Summary
member of GCN subfamily
Computational Description
GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60800.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1).
Link
InterPro Scan - TAIR