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Mutant Lines
54-4438-1

54-4438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 5281 [Map]; Strand: w
  - AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: 0; Region: intron16 (CDS)
  - AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: 0; Region: intron15 (CDS)
Flanking Genome Sequence: 54-4438-1 - 5-prime edge
```
ACAGTGATGG TAACGATTCT TTGATATGCA TTTCAGTCCA TTCGAGGTCC 
ACAGCAACTC TGAAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 5165 [Map]; Strand: w
- AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: 0; Region: intron16 (CDS)
- AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: 0; Region: intron15 (CDS)

ATCACTGTAC TGTTGCATTA AGAGCATCAT CGATTAGCTT GTTCAACTTT 
TTTCTTGTAG ATTCTTAAAA CAGTTATCAT TGTCTACTAC TGTGACAGAG 
AACCGAGCTG ACAGAGGGGA AAATATACAT GATGAAAGGG CTAGTACCAA 
TAAACTCAGA TTCAGAAATA CTTTACTTAC ATGCGAGAGG GTCAAGCTCA 
AGATGGCAGC CTTTGTCTCC AAAAGATTCT GAAAATTTTC AGTAAGTGGT 
TTTCTTTAGT AGACACACTG GAATCTATCT CATTAATTTG TTCAATTTCC 
CTGATGATGT TTTCAGGCCC TTTTTCAACC CTCGTAAACC AATCTCTTTG 
TCAAATCTTG GTGAAATTCC TCTTTCAAGG TTAATCTCAG TAGTCCAAGC 
T

AT4G00020.1

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00020.2

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR