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54-4439-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24586664 [Map]; Strand: w
      • AT1G66040.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4439-1 - 5-prime edge 
    CACGTGAGAG TCTCTTCTGA CGGAGGTGTC ACCTGGCACC GCATACATAC 
    ACCGTCTCCG TCGCAAGGAA GCTGAGTTTG AATCGCCATT GTTGAAACGA 
    GTGTGAGAGA TAGAGAGAGA GGTGTTATCG AGAGATGAGA AGAGGAAGGG 
    GAAAAATGAA GAGGCGTGTT TTGAAATTTG TTGGGGAAGA AAAAAAAACG 
    AGAGCGTATT TAAAAAGTTT CAAAACGAAT TAAATAAAGA AAAAAATCTC 
    ACAGTCTCGA TAAGATCGTG AGTCGTGACA GAATGGCAGC TAATATATTT 
    TATTTTTCCT TAATTGTTTT GGGTCAAATA TATGACGAAT TTATTGCAAA 
    ATGTAAATGA TAAAGACGTG ATTAGTGGTG GTTTATTGGA AAATAAATGT 
    TTCTCAAATT TAAATTAAAT TTGTAATTGG TTTTTTAAAT TTCAAAAATG 
    TATATATTTA AAACGAACAT ATTTTATTTT TGAGGTTTAC TAAAATAAGT 
    AATAGTAGTA TGCTGTCAAG TTATATTAAA CAATATGTGA TTAGTTTTAT 
    GACAATAATT ATATGACACA TTTATCTATA AAATTTAAAG TTATATCGCA 
    TGTGTTGGTC AATAGTTATT TATTGGTTAA TACTCCCTCT GTTTTGAACG 
    AAATAATTGT CGTTTAAAGT TTTTGNACAG TAATTAAAAA CANTTNTTTN 
    TTTNTTTAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24586574 [Map]; Strand: w
      • AT1G66040.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4439-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTGGTGGCAC CTGTGTCACT 
    CCATGGCACG TGTCGTGTCT CCTTCCTGAA TCACTCGCTT CTTCCACTGG 
    AGATTGGGAG TGTCCCGATT GCTCCGGCGT TGTCGTTCCC TCCGCCGCTC 
    CGGGTACCGG AATCTCCGGA CCTGAATCTT CCGGTTCAGT TCTCGTTGCT 
    GCGATCCGTG CGATTCAGGC TGATGTGACT TTGACCGAAG CTGAGAAAGC 
    CAAAAAGAGG CAGAGACTGA TGAGTGGTGG TGGTGACGAT GGTGTCGATG 
    ATGAAGAAAA GAAGAAGTTA GAAATCTTTT GTTCTATTTG CATTCAATTG 
    CCAGAGAGAC CTGTCACGGT TCGTTTTCAC TCGCTAATTT ATGCTTGTGA 
    CTTGTGTTAA TGACTTGTTA GATCTTGTGA TCAATACACA TAAGCCCTAC 
    TAAATCGCTA ATTTATGCTT GTGACTTGTG TTAATGACGT GTTATATCTT 
    GTGATTATTG TTAATAATAG TAGTAGAATC GCGAATTTAT GCTTGTGGTC 
    TGTGTTAATG CCTTGTTTAA TCTTGTGATG AGTACACATA AGTGTAGTAG 
    AATCGCTAGT TTATTTGTAT ACTTGATAAT GATGATTAGT GTATTCAAGT 
    AGCAGACTAA TGGATGTATT GTTCTTTTGT GTTTTGTAGA CACCGTGTGG 
    GCACAATTTC TGTTTGAAAT GTTTCGAGAA ATGGGCAGTA GGTCAAGGGA 
    AGCTAACTTG TATGATATGC CGAAGCAA

AT1G66040.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
Computational Description
VARIANT IN METHYLATION 4 (VIM4); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66050.1); Has 6297 Blast hits to 5041 proteins in 427 species: Archae - 0; Bacteria - 14; Metazoa - 4562; Fungi - 413; Plants - 874; Viruses - 19; Other Eukaryotes - 415 (source: NCBI BLink).
Link
InterPro Scan - TAIR