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54-4455-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23108115 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G62475.1 - [+] show detail - transposable element gene
        Distance: -985; Region: promoter
    Flanking Genome Sequence: 54-4455-1 - 5-prime edge 
    AAACTAACAA AATCGGTTAT ACGATAACGG TCGGTACGGG ATTTTCCCAT 
    CCTACTTTCA TCCTTAGAAC TACCACTAGA GAAACCTCTA CACCCAAGAC 
    TCGCATCAAG CAGTTGTACA GAGGAGTGTG GCAATGGAAT TTGACGGTAA 
    GGATGATAAG TAGAAGAATG AATCATACGA GAGAAGAGAG CACCGGAAAA 
    TCGTACTTCC TCTTCTCCTC TCCCGCCGAT TACGCGGCTT TGACTGGAAA 
    TGAATTCATC CGAATCGAAT GAAGAAGAGC AAATGAGGAA GCTTCTTAAT 
    GAAGTCTGAG TGGAGCTTCT TCTCCTAGAG AGATGGAGCC ATGGAGCAGC 
    AGCCATGGAA GCTCGACGGC GGTTAGCAAT GGCGAAGTCG GTGAAAAGCC 
    ACTGATTTAC GGCGGAGAGC TCTTCACGTA TTTGGGCCTT TGTTTGATTA 
    GAAGCTTTGA GTGATAATAA TTTTGACCCA TTAAAGGCCC ATTGATCTGG 
    TTACATATAA CCATTGGGTC CACCAGGAGC ATTAAAGCGC ANACGCATAA 
    TCATCAAAGG TGTCAATTTC TTTTTTTAGT TGGAAGTTAT CTGTATGCAT 
    CTTATCTTCG TTTTANGGTC GTGATATTTT CTCAAGTNNT TTNTAGGGGA 
    CCANTTTATT TNCNNATTTN NGGGANNCTN TCNTACNTTT NTNTTANNNN 
    ANGTNNNCTN NGNNTNCNNG TNNNTGGNTN TTNNNTNNNN GNNNNNNNGA 
    TGNGNNNNNN NNNG

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62475.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR