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54-4485-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 21527 [Map]; Strand: w
      • AT4G00060.1 - [+] show detail - Nucleotidyltransferase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4485-1 - 5-prime edge 
    CTTCCAAATT CTTCTCCTCT GCTTCATCCA TGGCTCAGAA TCAACTTATC 
    GATTCGCTAA CATCTCACAT ATCTTTGTAC CACTCCCACT CGTCTTCCTC 
    TTCAATGGCT AATACTATCC CCAATCCTAG GTCGGCGATC CTCCGATGGT 
    TCTCTTCTCT CAGCGTCCAC CAGCGCCTCT CTCACCTCAC CGTCGTTGAT 
    CCCAAGTTCG TCCAAATCCT CCTTCAGATG CTTGGTTATA TCCGCACTAA 
    AGGCCCTTGC TCTTTCATCA TCCTCCCAGA CCTCCCTTCC TCCTCCGATC 
    TCCCCAGTCT CTGCTTTAAA AAATCTCGTG GCTTAATCTC CAGGGTTTCC 
    GAGTCCAACG AGTCAGAGCG TTTCGTTTTC GACTCTACTC GGCTCTTTGG 
    TTCTGGAGAA GGGGAAAGGG CTCAAGATTG CTCTTGCTCC GTCAATTCCC 
    TCGATTCTGT CGTCATGGCC GAGGAATTTC TTACAAATGT GGATCGTTTC 
    GTGGAGACTA TGGACGTCTT ATCGGATGGA GCATTTCTGA GAGGAGAAGA 
    GAGTGATTTG GGGTCCAATT GGGTAGAATT AGAGTGGCTC AAAGCCAAAG 
    GCTATTATAG CATGGAAGCC TTCGTTGCAA ATAGGTTAGA GGTAAGCATG 
    AGATTAGCTT GGCTGAACAC AAATAGTGGC AAGAGAAGAG GAATCAAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 21411 [Map]; Strand: w
      • AT4G00060.1 - [+] show detail - Nucleotidyltransferase family protein
        Distance: -26; Region: promoter
    Flanking Genome Sequence: 54-4485-1 - 3-prime edge 
    TTTGGAAGGG AGATGGCGAT TTTNCATTGT TTCCTCTCTT TTTTTCTTTC 
    TCCAGAGGAA GACGACGAAC GGCTAATAAC TTAAACCAAC TCAATACCCA 
    ACCGGAAATT GGAACCGGTC TTACTTGCTA ACCAATCAAT AGGAGTCTAT 
    TTAAAACGGG CCTGGGCTTG AGCCCNTTGT AAATGCTNGA TGCTCTTCTT 
    CTTAGACAGT AGTAAAATTG GGCCTTTTTG TCTCGGCCAA GCCTTTTTTG 
    CGTCGGCGAT ACTCTTTTTC TATTTCTCTT AGCTACAGTG ACCATCTCAT 
    CTCATGTATT TGCCTTGTTG GTGTGAAAGG AATCTCGCAT TANCCAACAT 
    TTGACTTTTA CTTTCTTTTN AAACCTATCA CACACACACA CATGCATGTG 
    ACATATGTAT CACATCNTCN CAAATNTTCN ACTTTTNTNT TTTTTCAGNG 
    TNNGACGAAA AACAAATTCA ATATTNCACA TTATGCNTCC GCAAATTAAA 
    ACTTNCAACT TTNNTGCCCT TTTTACACTA CAAAATNNCA ATNNTGNGTG 
    NTNANCNCNC NTNTGNATGG NGNAANTTTA ACNNNNNNAC ATTNGGGGGN 
    NTAAAAAGAN TACNNGNTGT NNNGTNGGNT TANNNNAAAA AANTNAAANC 
    GANATANAAT NTTTNCATAA NTNNNTGNTC NGACNCNGGG AAANCCCCCG 
    NNGTGTGCCT TTTTTGGGGG AGGNNNNATA NNNNNCGTTN GNNGTCAAAA 
    NCCNACCGGG GGNCNAANNN NCN

AT4G00060.1

Model type
Protein coding
Short Description
Nucleotidyltransferase family protein
Computational Description
maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR