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54-4502-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2943977 [Map]; Strand: w
      • AT3G09580.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G09585.1 - [+] show detail - pre-tRNA
        Distance: -635; Region: promoter
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: -976; Region: promoter
    Flanking Genome Sequence: 54-4502-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGTG ATTTGCATGG CCGCGGCGGC GAGGGAAGAA 
    ATGAGAAGTA GATGAGGTTG GGAGAGAGAT CGCCACGGGC ATTTTAAAAG 
    TTTGGATAAG GTTTTTCTCA TTCCTTTACT TTATTTTCCC CGGGAAAATT 
    ATTTGTCTAG AAAAAATAAT ATATATATAT TCAAATAATT ATTTAAAAGA 
    TTCGAATAAG TCTTGTTTTC TTGATTCTTT TCCTTATTAA TCTGAACAAA 
    AACAAATTAT GAAGACCAGA GTCCTAGTCC GTAGAGACGG ATACAGCCCA 
    AGAGACGACC TTAGTCCTGC GGAAGATGAA GACCAATGAA GAGTAGGAAG 
    ACTGGTGATT GCTTATAGGC CGTCTATTTT GGCTTATAAT GATTTTAAAT 
    AAGTGTAATG GATTTTGTTG CTTAATACTT CGTCTGCTAT CTTGTTTTAA 
    ATATTTAAGA AAATAAAACG ACTTTCGGGA TTGTCTTTTT CTTTCTGTTC 
    CATGTCTTCT TAACTGCTAT GAGTAAAAGA GCTCTCCCAG ACTCTTCTTC 
    TATCTCCAAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1764051 [Map]; Strand: c
      • AT3G05905.1 - [+] show detail - other RNA
        Distance: 0; Region: exon5 (NonCoding)
      • AT3G05900.1 - [+] show detail - neurofilament protein-related
        Distance: -67; Region: promoter
    Flanking Genome Sequence: 54-4502-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTCACACC CCCCACAAAA ACAGGGTGTC AAGTTGTCAA CACACTCTGT 
    ATATTCTTAC TCTTTTCACT TTCTCTCTAT CTTTTACTAT TTTATTATTA 
    TTCTTATCCA TTATCTGCTT TTGTTGGACA CTTTATAATA CATAAAAGAA 
    TTAGTTAGGC TTGAATT

AT3G05900.1

Model type
Protein coding
Short Description
neurofilament protein-related
Computational Description
neurofilament protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 108105 Blast hits to 59732 proteins in 2949 species: Archae - 957; Bacteria - 23784; Metazoa - 40626; Fungi - 12056; Plants - 5351; Viruses - 591; Other Eukaryotes - 24740 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05905.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G05900
Link
InterPro Scan - TAIR

AT3G09580.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09585.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: CGA)
Link
InterPro Scan - TAIR

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR