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54-4517-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20589126 [Map]; Strand: c
      • AT5G50590.1 - [+] show detail - hydroxysteroid dehydrogenase 4
        Distance: 0; Region: exon6 (CDS)
    2. Chromosome: 5; Position: 20622468 [Map]; Strand: c
      • AT5G50690.1 - [+] show detail - hydroxysteroid dehydrogenase 7
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-4517-1 - 5-prime edge 
    TCTGCAGATT CCGTTAACTA CCGCTTTGGC GCATTCCGCT GCTGACTCGA 
    TGGTCACAAC TTGCGACCAG TCTTGTTTCT GCAAAAGAGA CTTCAGTCAT 
    AAAACTTGGA CAGACTAAAA TGAAAAATGA TGATAGTAAA ATACCTCAGC 
    TAAAAGGTCC GGATTAGTAT TTCCGTTTTC GATTAGACCA GGAAACACGA 
    TTGTCACACC AACTTCTGGA TGAAGCTCGA TCCTAAGAGT CTCGTAGAAG 
    TTTATCATAG CTGCTTTGCT TGCCTGAAAC AAATGTTACA TTCATTATGT 
    TAATATGTTA CGCTTGGTTA ATTTAGAGAA CAAGAGAAAG AAAAAGAAGA 
    AGAAGCATTT ACAGCATATA TGCTCATCCT TGGTACTCCA GACCATCCAG 
    CAGGTGATGC AACCGCTATG ATCTTTCCTT TTGTTTTCTT GAGATGCGGT 
    ATAGCGAAAT GTGTCGCGTA AACCGGTCCC CAAAAGTTAG TGTTCTGCAA 
    ATTTTGCCAA GGTTCATATA TTGTAAAAAA GACTTCACTA TGTATTAAAT 
    CTAAAAATGT ATACCACAAT GGGAAGAACA TCCGAAATTT CAGAATAGTC 
    CTCGAAAAAT TTGGCCTCCG CAATTCCAGC ATTGTTCACC AAGTGATCCA 
    CTGATGTAAA TTTTGGTATA TTTTTTATGT TCTTTAAGCA AGTAGCAATA 
    TTAGTTATTC GAATAATAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20589242 [Map]; Strand: c
      • AT5G50590.1 - [+] show detail - hydroxysteroid dehydrogenase 4
        Distance: 0; Region: exon6 (CDS)
    2. Chromosome: 5; Position: 20622584 [Map]; Strand: c
      • AT5G50690.1 - [+] show detail - hydroxysteroid dehydrogenase 7
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-4517-1 - 3-prime edge 
    TCTGCAGAGG CAAAACCTTT GTGGCAGAGC CGTCGTGGGT TCGTGTCCTG 
    TTCTGGCTTA GTGCTATATG CCCTGAGCTT CTGATCTCTA AGCCTAAAAG 
    GAATTAACCA GTTGTGTTGT TTAATAATTG CATAATAGAG ATAAAAATCT 
    GAAATACAAC ATGATGGCCA TCTAGTTTTT CTAGTTCTGT TCAGTTTTTT 
    TTTTTTTTGG GTTTANNAAA ANNTNNNCCC ANTTTTTTTT TTTTTTTNGG 
    NTTTTTTTTT GGGGGGNTTT AAAAAAAAAA AAAAAAANNN AAANNTNAAN 
    TTTTNNNCCN AANNCCCCNN NNAANGNNTT TTNNAANNNN TTNAANNNNN 
    TCNGTTNANC CNAAANNNNN NNAAANTTNG GGGAAAAAAN CCNAANNAAA 
    ANNAANAATT TTTTNNNNNT GGGAAATTTG NNTTTNNCCC CCNNNNCNNN 
    CCCNAAAANT TTTNTTNCCC NNNNNCNNCT TTTAAAAAAA NNNAANTTTT 
    NNTNAAANNA NNNNCCNGGG NCNGGANNCC CGNNNNNNTT TTTAAAA

AT5G50590.1

Model type
Protein coding
Short Description
hydroxysteroid dehydrogenase 4
Curator Summary
Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.
Computational Description
hydroxysteroid dehydrogenase 4 (HSD4); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 7 (TAIR:AT5G50690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50690.1

Model type
Protein coding
Short Description
hydroxysteroid dehydrogenase 7
Curator Summary
Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.
Computational Description
hydroxysteroid dehydrogenase 7 (HSD7); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 4 (TAIR:AT5G50590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR