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Mutant Lines
54-4518-1

54-4518-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 11215266 [Map]; Strand: c
  - AT4G20970.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-4518-1 - 5-prime edge
```
TTTGCATCCT TCTATTTTTC TCAACCGTTT TGCGATCTAC AGATCTTGAT 
TGACCTGTGT TTGAATGGCT CGGCTCCATT TCTTTTTTTA TTCCTGAATT 
GTTTCACATA GACCATGATA ACAAACTCAA TGTTAACCAA GCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 10713647 [Map]; Strand: w
- AT4G19700.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
  Distance: 0; Region: exon2 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATG 
TTAACATGTC TTCTTGACCA TCTTTTTTTT TNGTNCGTNC CAATTAAATT 
AATATTTTTT TTTGGTTCCN TAAAAATNNT TTCCCNAAAA AAAANNNNAA 
ATGGNTNNTT TNTTTTTNGA ANGCCCNNNA AAATAANTTT TGGGTAACCC 
NTGNNTTTTN TNCCANCTNN ANGGGANCCC AAACCNNAAA NTCCCAAAAA 
ANNNCAATTN ATTTGGCCAA AAAAANTTAA AGGGCCCCCC CNNNNTTTNN 
GGGGGGNAAA AAANAAANAA NNAANCCTTT NAANGNANTT AAAGGGNNTC 
CAAAANNGTT TGAAAANGAA AANTTCCNAA ANTNNTTTTA ANNTGNCCCC 
GNGGTNGGGN GNCTNNTNNN NAANGCCAAC CCCNNNNNTT GNANTTTNNN 
ANCCCCTTTA AAAAATTTNN NNNCNGCCAN TTNAANTGNA AAAGGGTTNA 
AAANGGGCNT TGGGNTTTNN CCTTTGNNAN TTGGNANGTT NCNTTTTTTT 
TNCCACCCCC CNACNTTTTT NNACCCAAAA AANNNNNCCT NCNNTTNNAA 
ACCTAAAANA ATTTTNNANA AAAAAAAAAA AANNNNTTNN ANTNNCNACC 
CGGGNCCGTG NCCCGGGGNC NNTTTAAA

AT4G19700.1

Model type: Protein coding
Short Description: SBP (S-ribonuclease binding protein) family protein
Computational Description: RING; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT5G45100.1); Has 639 Blast hits to 639 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 215; Fungi - 0; Plants - 349; Viruses - 21; Other Eukaryotes - 52 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20970.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to fungus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR