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54-4527-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13677343 [Map]; Strand: c
      • AT4G27310.1 - [+] show detail - B-box type zinc finger family protein
        Distance: 433; Region: intergenic
      • AT4G27320.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: 1121; Region: intergenic
    Flanking Genome Sequence: 54-4527-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAC CCAAATGACA CACACGAAAC CAATAGGAGT 
    AAAATTTTAA ATTAAAATCG AAAGAACTAT GGTGAACAAA GATGTGATCC 
    TGTCATGTGA ATGAAGAACA TGGTGAGATA ACGTTATAAG GTAAAACATG 
    GGGGTGTCAA TATTTTATGG ACCATCAAAC ACAGTTCACA GACGCGGCAG 
    ATATGACAGG TTCAATGTTC TTGGCGAATG AATGAAACCT CAAGGACCCA 
    TTACATTATA AAAATCTCTC GAAATTTTAT CATATTTAAT TTCATTTTCT 
    TTGTAGTCCC CACAATTGAG TGGTCGAAAT TACAAAGCAA ATCATATACT 
    TTATTTTTAC GGTATGTGTA TACCATTGTG TCCATCTGCC ACCAATCTCT 
    CCCCCATTCC TTTTGATCCA TTGAATATAA TCATATAACA TAAGTCATAA 
    ACTTACGAAT CGAAATTAAT TTACTTACGT AGATTAACAA AAAAAAAAAN 
    CANCNTAATA NNGATTTNGA TTTNAAAAAT AAAAAGTTAA AATTNGNTTT 
    TGTCCAACTT TCAAANAAAN AAAAAANCTA CCTNNTNTTT AAAACAAAGT 
    NTTGTCAAAA AAATGAACGG GGGGGATTTA CTTAANCAAG AAAAAAANGG 
    ATTCANCGGC TGAAATCTNT TTTTGTTTTG GAAATCNCAA AAATCGGGAA 
    AAAACNATGT NTCGGCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13677399 [Map]; Strand: c
      • AT4G27310.1 - [+] show detail - B-box type zinc finger family protein
        Distance: 489; Region: intergenic
      • AT4G27320.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: 1065; Region: intergenic
    Flanking Genome Sequence: 54-4527-1 - 3-prime edge 
    CCTATATACA TACATCAAAA CCGTTTATCC CTTCTTTTTT TTAACCACTT 
    GATTCTCTGG CTTACCGAGG AACTGGTGTT GTGGGGGTTG GACAGTTGGG 
    TCTCTCTCGA ATTAATTTGA ATAAAACATG TGGTTCTCAT TTAAACTACA 
    TATTCTTTTA ACGCAAATTC TTATATTGTT TCAATTTATA AGTTTTTATA 
    CGATTCCAAC AAAACAAAAC AAAACATTCG AAATTTAAAC TCATTATAAA 
    ATCGATATAA GAAAGTAGAA AATATTTGTT AGGAAATTCG CTGGGTTTCA 
    CTATCAACGC ATGACTAGCG TCAAATACTT CAACCATTAG TCCATAGTTC 
    CAATTCCTAA AGTCAAACCA AAAACCTAAC GGATCAGTCT TTATCCCGTA 
    CGTTGAGTTT GACTATTAGA TTAAACTACA CTAATTAACT ACAAACCTAA 
    CATTCATTCA TTTTATTCAA CCATAACGTA ATTTACATTC ACACGACATC 
    GTCAATTCCA AATATAATAA TTCAAAACTG GAAACAGGAG ATATGAAACT 
    TGTCATTTGA AACTCTATGA CTGGATCAAT AAATTAAACA TGCGAGAGTA 
    TAGAAATGAT TTTTTGATTA GTTCCATATT TGGTAGCTTC CTCATGAGAA 
    AATGTATGCA TGAGAATCGA GAATTGTCAC AATACATATG TGAATTTCTC 
    TTCTCTTCTT TTN

AT4G27310.1

Model type
Protein coding
Short Description
B-box type zinc finger family protein
Computational Description
B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT5G54470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27320.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Curator Summary
Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.
Computational Description
PHOS34; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT5G54430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR