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54-4532-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26391944 [Map]; Strand: w
      • AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: -500; Region: promoter
    Flanking Genome Sequence: 54-4532-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATGGATAGTT TAAATACATC TTTCTAGCTA 
    GAGAAAAAGA AAGCGGAAAT AAAGATATAA AAATATTTGG AAAGAAAGAT 
    ACTGGGAGCA ATTTAGCTAC AGCATGACGA TGAGTCTTAC TTTGATTCTG 
    TCAACATTAT TAACCTGAGA CAATCCCAAA AGTCTTTCGT CCCAATATTG 
    AATCTTCTAA TTTTGATATC TATGTGATTT TGCATATGCA CTACCTGAGA 
    GACCAACAGT ACCTAGAGGC CAACTTGTCC TTTTTATTCA CCTTTCTTGC 
    ATGACTTTTC CTATGTTGAA AAGTTAGACT CCTCTTTTAC ACTTCATGTA 
    CCCCACTCCT ATACGTATTT AATCTAAATA TATATACCCA CCAATCCTCT 
    CCATCTACAC AAACAGCCCA AATATCAAAC CTTTCATCTC TATATCTTTA 
    ACCTTGACTG CTTCTCTTCT TCTACAAGAA ACCAGAAAAA AAGAAAAGAA 
    AAGAAAAAGA AGAGATTAGG GATGGGTTTC TTAGAGTTGT TGGAGGTGGC 
    TTCAATGCCA ATCGTTCAAG TTCTTCTTAT CAGCGTCCTT GGCGCTTTCT 
    TGGCAACCGA TTACTGCTCT CTTCTCTCTG CTGACACCCG AAGATCCGTG 
    AACAAGGTCA ACCTCCGTCT CTGCTTTTCT TTTTTCTGGT TNGGTGTCAA 
    CTATGCATGC ATTCATATAT CATCACTAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26391942 [Map]; Strand: w
      • AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: -502; Region: promoter
    Flanking Genome Sequence: 54-4532-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CATCATATTC GAGCACATGA GTCACAACTA ACAAATTAAC ATTTTTCAAA 
    GTGGCCAAAC TTGACCTTTT AATCATAATA TTATTTGTCT TTATCACCTA 
    ACATAAAGTC ACGATACAAA ACATGTCTTG AATTTGACCC CCACGCTTGA 
    TTGCTATGCT AAGTCCACAA TGCTCCTCAT AGGCTCATAC TCTCTACTTT 
    ATTACAAAGA TCAATAAAAA AATGTCAACT GTGATATGTG TGACTTTCAC 
    AAGCCACTCT GCTAAGCTGA CTGATCCCAA CCCTGCACAT ATGACATATG 
    CACACATGGA AAACAGTTGC ATTTTAATTT GAGGAAAATA ATCTCATCCT 
    GCACATCTCC TCTGTTTCCT CTTAACAACT CCACAGTATC TTGTTCGAAT 
    TTATTTAACC AATCAAGAAA TAAGTGATAT GCTAAAAAAA ACTTGTGGGA 
    TTAAAACCAA ACTAGAGGAA GAGGAAACCG TCGTTTGCTT GTATGTCTCG 
    GAGAATTACG TGTGCTGATG ATTATAATAA ATTAAAAGTA AGAGAGTCAA 
    ATATTTGTTT AAACAAGAAA ACGGTAAGAA GGATGAGACC AGGTTTTGTG 
    GTAGAACAAG TCCGGGAGAT AAGATAGGTT GCGTGACTAG GAAATGGCGT 
    GTCTACACAA GGGCACCTTT TGACTTTGAT CATATTAACA AAGGAACAGT 
    CCTTCGGTTA CACTTATCCC AAATCCTGGT N

AT5G65980.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Computational Description
Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G17500.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR