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Mutant Lines
54-4538-1

54-4538-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26393081 [Map]; Strand: c
  - AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: 54-4538-1 - 5-prime edge
```
GATGCGTAGG AGAGCCCAAT GGATCTGCAG ACACGTACGA TTCCCAAAAG 
GACTGCCTTC CTCGTCACAG ATGGCAGGGA CCAGTATAAG CATAAGGTTC 
CCCATATTGC CTACGTAGAC AGGACAGTAA ATATGATTCA TGTGAGAATT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 26393148 [Map]; Strand: c
- AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
  Distance: 0; Region: exon4 (CDS)

ATTTGAAGAC NNTAGAGGTA TTTTNCCGAC CGTTACCGAC CGTTTTCATA 
ACGCATCTTT CTCTATGGCC GTAAGTCAAA CATACATACA TATGATCTTC 
TGATCTCTGC TCAGACTTAA TTGTTGAGTT GATCGTGTGA TTAATTTTTG 
TCAAGGGCAG CTCGGGGGTT TCTACATATG GACNTACAGT NACCAACTGG 
TAAGAAGCTC TGCTACACAG TTTAATAGCT CTTGAAGCCG CCGGGTTGGT 
CAAGTCTCCC AACAAGGACA TCGACTCTGA TCCCCACGCT CTTCTCCTCA 
AGCCGCACCA AAACCAAGAC CTTGAAATCC AAGGCAAACA AAAAGTGTCT 
ACCAGGACAT ACATCAAGGA CTTGCTCCAT CAGATTCTTG AGGAACTCTT 
CGCACCACCC ACCATTGGTG CCGTAAGTCT TTTTAAAAAA AGAAGACATG 
ATTACGTTTC CAACCAACAA CTAATAAATC CACTGCTCTG ATGCGTTGTT 
ATATGTTCCA TTCAGATTCT TGGCTTCGTC TTCGGAGCAA CCAATTGGCT 
AAGGAATCTT NTAANAGGNG ANAAGGCCCC NTTGNTGAGT GATNCNNGAC 
TGAGANAAGC TGCTTGGGNT ATNAATTGCA TNNTGTGGNN NNNAGGCNAA 
ATNGAAAATT TNCNGGGGGN TCCNTNTNTT TTTNTCNNAN NNANGGNGNA 
ANTATNNTTG GTNNGNAGNN NNNAAANNCT CNCCNNCNNA ANNNGGGNNN 
ANNCNTTNCG GANNTNGTTT TACTNNNNAN AAAAANAATA NGNGNNTNAN 
CN

AT5G65980.1

Model type: Protein coding
Short Description: Auxin efflux carrier family protein
Computational Description: Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G17500.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR