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54-4555-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2790653 [Map]; Strand: c
      • AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4555-1 - 5-prime edge 
    NGTGTCCCTG TCTACGTTTC TACGAACCAC CTCTGGATCC GCGTTATCTT 
    CGTCGCTCGT GAACTTCCCG CGCAACGAAC TAGTCCTCAA ATCGCTCACC 
    CAATCACTAA GCTCTGCCTC ATCCTCAATC AAGCTCTTGG ACGCGCGAAT 
    CTCTCCTCCA GCTCCACTTC GCCGCGCGAA TTCGGGTTGA GATCACCAGC 
    CCGGNNNNCN GGNNNNNNNN NCCNCCNNNC CCNNNNNNGG GGAANGGGGC 
    GNGACACGNN CNNANGGGGG AANNCNGCGC NAAAAANNAN NNNNNNAAAG 
    GGNNGNNAGG NGGGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2790775 [Map]; Strand: c
      • AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4555-1 - 3-prime edge 
    CCAGTAGGGG TCCAAGGAGA GGAAGGGAAG GCCAATCTGA TAGGTTCGGT 
    GGTGCGAAAA GGGGAAAGGA AGGTGAAATG GATAGGTTTG GGAGTCCGAA 
    CAGGAGGAGA ACCAGCGGCG AGCCTGCTGA TTCGTTCGGG AACAAGCNGG 
    TTAGGTGATC GAGAAGGTTC AAGGAACGGT CGTGTTCAAG GAAAGAGTAG 
    TGAGTCGTCT TTTCGTGGAA GGAGTGATAG AAATGTAGAT TCAGGGTCGT 
    CTTTTCGTGG AAGGAGTGAC AAAAATGTTG ACTCAGGGTC GTCTTTTCGT 
    GGTAGGAATG ATAGAAATGT AGATTCAGGG TCGTCTTTTC GTGGAAGGAG 
    TGATAGAAAT GTAGACTCAG GGTCGTCTTT TCGTGGAAGG AGTGATAGAA 
    ATGTAGACTC AGGGTCGTCT TTTCGTGGTA GGAATGATAG AAATGTAGAC 
    TCAGGGTCGT CTTTTCGTGG TAGGAATGAT AGAAATGTAN AATCAGGGTT 
    TANGAGAGAG CCAGGTTCCG AAAACAACAG GGGCTTGGGG AAACAGACAA 
    NAGGCTTAAG CCTGGAAGAG GAAGATAGTA NTGACNATGA CNAGAACAGG 
    GTTGGATTGG GAAAACATCN ATGATTTGCC TANTGAANAT NNTNNTGATN 
    ANGATNATNA AAATNATNAN CCTNTTATTA ANAAAGCGGN TTCTGCTNAN 
    GCTGTTCANA CTGATAANCC ANCTG

AT5G08610.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).
Link
InterPro Scan - TAIR