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54-4579-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3517848 [Map]; Strand: c
      • AT5G11070.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -853; Region: promoter
      • AT5G11080.2 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron10 (CDS)
      • AT5G11080.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: 54-4579-1 - 5-prime edge 
    CATATCCCCA ACAGGTCAAA ATCGGTTACA GGTTTGTTCT GTCTCTTTCT 
    TCATCACCAA TTTATGTATC ATTCATTGAC ACATACACAT TTTGACCTTT 
    TTCTTCATAT AGTCACATCA CTCTTGGCTG CAAACAAGTA TTAGAGCAGG 
    AAGGAGGATA CGAATTATAT CACGTAGGAG ATCATCGAGG AATCAACAAC 
    ATTCCGATCT CTATTTCAAT GCATCTGATC AAAATGCAGA CAATACCTCC 
    TCTCCTCGAC TTACCACAGA TGTAACTAAT GGAATCATGG TGACATAGTA 
    ATACATATAC GCAGTATAGT TATAACTTTT TTGCATTTGT GTGTTGGTAT 
    CATTTCGCAG GAGGAGCTTT CAGATTCAGA CTCAGAACAT GAGATGGTAA 
    ACATAGTTAG TACTTTAAAC CTATACTATA GCAAAGCCAA GAAAGAGATG 
    GTTGGAAGTT TTGGCCTCTG AGACACTATT TTTTGGATGT GGACGACGCA 
    GAGCGAGTGA AACTTGGTGG TGGAGAATGG AAGCAATTAN AGATGCAAAA 
    AGGAGACACT TTTATATTTT TCATTCGGAA CTCTATTTGT TTTTCAATTA 
    CAATAGAACA GCNAAAAGNC NTTNNNTTTN NNNGNNNAAA NNAANANNNN 
    NCNCNTTNNN ANNNANNNNT TTTTNNNNNN AAANNNNNNN TTTTTAAANN 
    NNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3517964 [Map]; Strand: c
      • AT5G11070.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -969; Region: promoter
      • AT5G11080.2 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron9 (CDS)
      • AT5G11080.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 54-4579-1 - 3-prime edge 
    GGGATATGAA CACTGCACGA CCANNNTCAT CCTGAGATAC ATACNAAAGG 
    ATAAGTGTTA TNTTGNAGTC NTAGACATAC ACATAAACGC AAAGGCATCT 
    ACAAGCTAAT TCNGTCTTAG AAATATTAAT CANATACATA TGTACACACC 
    TTGTGTTTNT NCCATGCTAA TNCTTGAGGT GCCATGGCCT ATCGCAAGAA 
    TTGAACTTCC TAAGNGACAC AAGAGGCTTC CTGATNCAAC CACTCTTTCT 
    TGCCGCAATN TTNNGGCTGA TGGGTCCGTA NNATTTACTT GATCCACAAG 
    CTACANTGAA ATATTCTGNA CAATGAAAAC AATTTNTATN CCNAAANTNA 
    AAAAAACATA TAATGGAANG TGGNAAAAAA CTTGATTNAA NAGAAGGAAG 
    ACAACATACT GGGTAAACAT NCAGNAGCTC NCACNAATNN ANAATNGANN 
    TANGNCNNTA TGTGCCAAAC TTTNNNNCAA NGANNNTTNT NNTNGAGANC 
    ANAANACTNC CCTNGGAACG GNATAAGNAG CTTGGGCAGG TAGNTAGTCA 
    TANATTAGNT GCNCTAAGAA ANTGCACAAN AGAAAGAGNG NTAGCNGTAA 
    ATANNGCAGG NNNNNATTTT GAAAANTAAA ATGGANAACN NGGNGNNTGA 
    NAGNGTAATG GNGANCAGAA AATANNANTN AATANNNATN ACGGATAGNN 
    AGTGTANAAT GGNTGNGGNN NANAACCAGA GAAGNAGNCN NGAAAGNAAT 
    NAGNATTATA GNANATANAN GNTTNNGGAG TNTANTTNAA AAAAAAG

AT5G11070.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11080.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11080.2

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1).
Link
InterPro Scan - TAIR