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54-4580-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16762387 [Map]; Strand: w
      • AT4G35240.1 - [+] show detail - Protein of unknown function (DUF630 and DUF632)
        Distance: 0; Region: exon4 (CDS)
      • AT4G35240.2 - [+] show detail - Protein of unknown function (DUF630 and DUF632)
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-4580-1 - 5-prime edge 
    CTCTCAAGCT TCCATGGNGN GNCGANANNC NGGCTGACNG TATGGCTTTG 
    TGTCTGCTAT CAGAGGATAC AACTTCGTTA CGCATTNTAA GATCCGGTTG 
    CNGGTTNAAG TNCTTATACT CAATCATACA CATGACATCA AGTCATATTC 
    GACTCCAAAA CACTAACCAA CCTTATTCTT GCTTCTCAAA GCTTTTTCTC 
    GTGAGCTAGA CGCAGTTTCT CCTCGGCCTA CACAAAGAAC AACTCTCTCT 
    TCAGAACAAA GGAACAGAAC AGAACCGAAC AGTGTTCTAA GATCAAAGAT 
    TTGATACAAA AACAAAATCA ACCATTACCT TGACTTCATG ATAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6610517 [Map]; Strand: w
      • AT1G19130.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR0...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4580-1 - 3-prime edge 
    CTTGAGAGAG ATATGTCGTC AAAGATGGTG AAGTCTTCAG AAATCGTCGG 
    AAAACTTAAT CTCAGGGCAC ACCAAGAAGG AGGCTTTTTC GCTGAAACTT 
    TCAGAGATTC TTCTGTTTTC CTCTCCACCT CTCAGCTCCC TCCAACCTGT 
    AGCTCTCTTC CTCGTTTATT TGCATCTATC TATGTCTTCC TTTGATTTGG 
    AATCTTGTTG ATATAGTGTC TTCATTAGTT TCCGATTTTG CATTTTGAGA 
    TTTCAGCGGT ATGATCCTCC GAAATCTGAT CAGACATAAG TCACGGCTTC 
    CGTAGAATT

AT1G19130.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35240.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF630 and DUF632)
Computational Description
Protein of unknown function (DUF630 and DUF632); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35240.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF630 and DUF632)
Computational Description
Protein of unknown function (DUF630 and DUF632); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G17110.1).
Link
InterPro Scan - TAIR