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54-4613-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93578 [Map]; Strand: c
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: -431; Region: promoter
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -345; Region: promoter
    Flanking Genome Sequence: 54-4613-1 - 5-prime edge 
    GTGATAACAT AGATTAATAC ACATGTATAT GTATAGAGTA GTAATAGGAA 
    CTTGAGATTT GAGCTAATAA TAAGATTTTG ATTACTTGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 93694 [Map]; Strand: c
      • AT4G00225.1 - [+] show detail - pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity...
        Distance: -547; Region: promoter
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: -229; Region: promoter
    Flanking Genome Sequence: 54-4613-1 - 3-prime edge 
    GTTATCACCA AAATAGAAAC AATTAGATAT AGCAAGTGAC CACTATTTTC 
    CTTCTAAGAC ACCATACGAA CTAATTTTTA TCAAAAACAA ATTATCAAGC 
    TCTATTACAA TTCCGCATGT GTGCTATACA TTAGATTAAT TAAAAGAAAT 
    TAAATCTGTT TTCACTCCAT TTATCAAAAG TAACATCTTT AACGAATCAA 
    ACCCATAAGG TACTCTTACT CTCTATTAAT AGAGGAGAAT GTGTCATCTT 
    CTCATTACTC AATAAGCATA CTTATCATAT ACACAATATC ACAATATGAG 
    AAGGTCAAAA TGTTCTTGCC ATCATCATCT ACTTGTTCTT GTTATCGTTG 
    TTCTTTGGAT ATCACCAGGA TATGCTTCAG CCGAAGATGA ACATGCAAAG 
    GTAATGATAA TATACAATTT TTGTCTCTCC AGCTTTGTTG TCATCAGATT 
    GAACAAAACT TTATGTTGCA AGGAGAATAT TTACTCTTGA AATTCTTAAT 
    TATAAAGGAT TTCTATATCA TATATTTGGG AGATCGACCG GATAATACAG 
    ATGAAACTAT CAAGACACAC ATAGATCTTC TATCATCTTT GAATATCAGG 
    TACATGTCAT TCATCAATAC ATGTATAAGA CATACTCTAA AACATATAAA 
    TACGTAACGT TTTATGGAGT AATGTTCTAC TTNGGTTGTT TGCTAACCAA 
    ATTTATAACG TCTCTTGATA AAACAGCCAA

AT4G00225.1

Model type
Pseudogene
Computational Description
pseudogene, similar to sucrose transporter SUC1, blastp match of 53% identity and 2.0e-09 P-value to GP|28371870|gb|AAO38059.1||AY190281 sucrose transporter SUC1 {Brassica napus}
Link
InterPro Scan - TAIR

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR