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54-4639-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3695 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 54-4639-1 - 5-prime edge
    TCTACAACTC CTTATGACAG AGCAACATTG TGTTATTTTT TTTTTNTNTC 
    AGGGAANCTT CCTATGACCG GANCAGNAAN GGNGAAANGC NCCTTNGCCT
    AACTATNTNA TNGTNTNTTN AGGTNCNCAA AGTAAANGTN TNGCNTGACC
    NCNTNTNTNA NCTATNCNAN GTTNTGNGGT TAACNCCATA AACNTNCAAT
    TCCGGTAAAC NGAGTAGTNG ACTCCGGNTT TGNCCANCAA AAAATTNAAA
    AAAATCTTAA AAATTNTTTT TNTTATTAAA AAATAAAAAT NATTTTTTCC
    TGCTGTNTAA TAAAAAAATN TTTTNTNTNC AATNTAAATN TNTTTTTNTN
    ANTTTCAAAN CTAANCTAAA ANTTTANTAA ANCAAAAANC TNGCAATTTT
    AAATNTAACA TTTTTTTTTN CNTTTNAAAA NNTTTTTNAA ANNTTNAAAA
    AANNNNGNGN TTNCNAAAAN NNNAAAAAAA NTTNGGCCTN NNGNNAANNA
    AAANCNANGG NNTTNCCNNN NAAAAANTTT TTTNACNTAA AAAANCCCNC
    NNNCCTTTTN NTNCCCAANN NTGNAGGGGA ACCTTTCNNG TNGGNAANNT
    GGGNNTAACA ACCCGGGCCN GAAACCCNNN NNCCNNTAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3811 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 54-4639-1 - 3-prime edge
    GTTGTAGACT TGACAATGTC AAATCCTTTT TTCTTTGATA ACATTCATCT 
    TCGAATT

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR