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54-4656-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26221907 [Map]; Strand: c
      • AT5G65615.1 - [+] show detail - pre-tRNA
        Distance: -200; Region: promoter
      • AT5G65620.1 - [+] show detail - Zincin-like metalloproteases family protein
        Distance: -25; Region: promoter
    Flanking Genome Sequence: 54-4656-1 - 5-prime edge 
    CTCGAGACGT TGGAGTCGCC ATTAACATGT TTGCTATTAC AAGCGTTGCC 
    ATTATTCTTA TTCTCTTCAT TTTTATTTTT ATTTTTTCTT ATTTTCTTTG 
    AGATTTTTTG GGTTTGGATT TGACTAAGTG TGACTACATG CGATTATGTT 
    GTGAGGTTCC AAAGTCGATG ATATGTTAAT CGATGTGCCA AAGGGTAATC 
    TTGTCAAGTC AAATTGAAAT TAAAACATCT GTTTACGAAT ATATTTATTG 
    TTTTTGAAAT AGTTAACAAA AGCTGGAATA GCTCAGTTGG TTAGAGCGTG 
    TGGCTGTTAA CCACAAGGTC GGAGGTTCGA CCCCTCCTTC TAGCGTTTTT 
    TAACTCTTCT TTTTCGTCCT TTTTCTTTTA CCGAAAACTG TTATGAAGTA 
    ATGGGCCTCA CAAGTTCACG AGTCACGGAT ACATAATAAA TAACTTGTTC 
    GAAGAGAGCA TCCCAAGAAC AAACACGACA CGTTCAAGAT ATAGTGTGAT 
    AGTGAAGTAG CTCTGTGTGT TGTTCCCCAA ATACTACGAC CACGTAATCT 
    GGCAAGTCTG ATCCCTTGTT CACTAAACCA AATATGTNNT AACTTTACNC 
    TTCTTTTAAA ACNAAAGAAC AATGAAATTT ATATNNTTGA TGAAACCAAA 
    CAGGAGTNAA ACTAATAACT TNACATTGAC NTTGNNCCAC AATTNTACAA 
    TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26222023 [Map]; Strand: c
      • AT5G65615.1 - [+] show detail - pre-tRNA
        Distance: -316; Region: promoter
      • AT5G65620.1 - [+] show detail - Zincin-like metalloproteases family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4656-1 - 3-prime edge 
    GTCTCGAGCC TCTCTCAATC TTCTTCGTCG TTCGCCAAAA CCCAAATATT 
    TCTCATCTTC TTCTTGTCAT TTTCGTCCCT CAACTTTTCG TAAATCATAT 
    CCTTGCCCCA TCTGGTCTTC TTCTTTCTCT TTTTGTCTCC CTCCTCCTAG 
    ATCCACCACT TCCACCTCTC TCTCCTCCTC CTCTTTCCGC CCCTTCTCCT 
    CTCCTCCGTC CATGTCTTCC GCCGCCGCTG CCGCCGTGGA ATCCGTCGTC 
    TCCGACGAGA CTCTTTCCTC GAATCCTCTC TTGCAGGACT TCGATTTCCC 
    TCCGTTTGAT TCCGTTGATG CCAGTCATGT TCGTCCTGGG ATTCGTGCTC 
    TATTGCAGCA TCTCGTATGT TCACACCTTC TTCTTCGTTT TTCTTCACAG 
    ATTCATGTAT TTTTGATTCG ATTGTTATAG CCTCTTTGAT TGATTTTCAG 
    GAAGCTGAAT TGGAGGAGCT AGAGAAATCT GNGGAGCCAA CATGGCCAAA 
    ACTGGTGGAA CCATTAGAGA AAATCGTTGA TCGGTTAACT GNTTGNTTGG 
    GGAATGATCA ATCACCTTAA GGCTGTCAAG GACACACCTG AGCTACGTGC 
    TGCCATCGAA GACGTTCAGG TTGAANAACT AATCATGGCT TGTTTTTTGG 
    TGTGTTAGTT CAGNTGACTN GGGGGGATTT ANNATNCTGG TTTTACTTAA 
    CTACATTGGT CTTTANGCAN CCANAAAAAA AANAA

AT5G65615.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asn (anticodon: GTT)
Link
InterPro Scan - TAIR

AT5G65620.1

Model type
Protein coding
Short Description
Zincin-like metalloproteases family protein
Computational Description
Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G10540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR