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54-4669-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20768089 [Map]; Strand: c
      • AT3G55970.1 - [+] show detail - jasmonate-regulated gene 21
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-4669-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TTTCATCGTT AACATGGGTG ACCAAATTCA 
    GGTGACTGTT TTATTTTCCA TATACCAATT ACTTTTTTAT ATATATAAAA 
    CTTCAAAACT TTAAACTAAA CTTCAGACGA AAAAGTCGGA CACNTTTTGT 
    TGTTTGTTTA AACTTCTTTC ATTACCTAAC CATAATTGAA ATCGAACTCC 
    CATATATGAT AACTCCTAGA TTGGTTTTTC ATTATTGACT AAAAAATATC 
    AATGATAAGC AAAAGAAAGT AAATATCACG TGGAGGGGAC TTGATTTTGA 
    TCTTCTTTTT TTCATTGAAG TTGTTAATTT TGATAAACCA CGTGCATGCA 
    TCATCTTCTT CTTCTTCTTT TTTCTTGTTC ATTTTTAATA AAGTTAATGC 
    GTAATTGGAA AGAAAACATA AAGTTGATAG GAAACCAATA ATGTATCGGT 
    GAAGCCACGT CGTGATATTC ATTTCCGTTC TTTAATTCGA CATGTGCCTC 
    TATTAAAGGA AAAAGAAAAG GTCCAACAAA GGAACAGAAA AAAACAATTT 
    CAACGACTAA GACGCTCTCA CAACTATTAA CATGTTTCGA ACGTGCTAAA 
    ATCAAATTTG CAGACTTAGT CAAACTAGAC TAATTTTCTT CTTCTTTCTT 
    CGNTNNGATA TTTTTGCACG TCTATGATTA CATTCTTTGC TTTGTTAATC 
    AAACAGNTTA ATATAAGGAC TATCANAGTT TTNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20768087 [Map]; Strand: c
      • AT3G55970.1 - [+] show detail - jasmonate-regulated gene 21
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-4669-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTGCATCCC 
    ATGATAGCAT GAGGAGCTGG TTCGACTGTG ATCCANGCGT CGTCGGATC

AT3G55970.1

Model type
Protein coding
Short Description
jasmonate-regulated gene 21
Computational Description
jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).
Link
InterPro Scan - TAIR