Home
Mutant Lines
54-4700-1

54-4700-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 85338 [Map]; Strand: w
- AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
  Distance: -644; Region: promoter

CTCGAGACCA CCTTCACCAC TATTATATAT TAATCACCCC TGTATATTTC 
CAAGACAAGT GATTAACAGT TAGCTTTATT ACATAATGTT TTTAGTCACA 
CTTGAAGAAA AGGCAAGTGG GTTTGGATGC AAAAGGCAAG ATTTTAACAT 
AAGCCCATTT GAGGCTTTTG GGCCTTAACC TTTTGGGCCT GTATTACTTA 
TGAATTACAC ATTTAACATT TTGATTATTG GAACCCAACA AAATGGAGCA 
AAGCCTTATA ATAAAATAGA GGGACATGGG TGTCATGTCG ACGTCAAGCG 
TGAGATGTGA GATGTGAGTT TGCACTGCAA ATCCAATAGA ATCTATTAAC 
GCCCCTTTTA AGTTACAGGG CAATCCAGTT AGTACAAAAT AAAGAGTTCC 
TAATAAATGT CGCAAAGGTT AACATGGTTA TATTAAAGAA GATGGTCGGT 
ATTTGCCTCC GGTCAAATAC TTAGTGAAGA ACTCACGGGC AAGAGCGTTA 
AGATCACCGT CCTCATCCAC TGGATTTTCC AGGCCAAAGA ATGTGCTAAG 
ATCCACTGAC TCTGTTGGGA CCTCAATAGC TTCTTTTGGC TGTTCTTGTT 
CTTGNTGNTG TGACATACAA GGAATGTGTG ACGACGAGGA AGACATATTG 
TCTTTGCTAT CGACAGAAGA AATGAGTGGC ACATTANATG AAGAGGCTGC 
TTCTGTCCGT GAATTGTT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 85277 [Map]; Strand: w
  - AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
    Distance: -583; Region: promoter
Flanking Genome Sequence: 54-4700-1 - 3-prime edge
```
ATTTGAAAAC AGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
CCCTGGTCTC GAGGCCTCGA AATTTTAATT TGAACTCAAG GAAAGATGTG 
TTGACACAGT AATGAATGAT CCAAAAGCT
```

AT4G00200.1

Model type: Protein coding
Short Description: AT hook motif DNA-binding family protein
Computational Description: AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR