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Mutant Lines
54-4712-1

54-4712-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 1825749 [Map]; Strand: c
- AT3G06040.1 - [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family...
  Distance: -86; Region: promoter
- AT3G06040.2 - [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family...
  Distance: -121; Region: promoter
- AT3G06040.3 - [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family...
  Distance: -107; Region: promoter

CTCTTGAGGG AGGACATGAA AGCTGAGTGG GTTGTTGTGA AAGGCCTTAC 
AAGGACGTAG TATGTCAAAT TTGTTGATAA GATCCTTATT GGGCTTGGCC 
CATAGACAAA AGTAATTTTG AGCCGAAAAG AGGAATCTTT CCACTCTAAA 
CCCTATGCGT GACTCATCTC CGTCTCTCAC AGTAATAATC AAGTCAGAGC 
CGGCGAAGCN TTGCCGTTTC CGCCGTTGGA GGTAAGCCTT ATCTCTCTTT 
CTCATCTCCT TCTCCGATTT CCAACTCTCA GATAATAGAT TGGCGGTTCA 
TGGATCCCAT TGTTTGATTT CGGAACTGTG TTAGCAGCTA ATAACCTANA 
CTATCAAATC TGATACATTG GAATTTATAT TTGGGCTATT GACGCTGAAA 
CCGATCTTAT GAATCATCCT TTCTTACTCA CCATTTTGTT TCACTGATCT 
TGATATGTTC ATTTGATCTG CAAAGAAGAA ACCTTTGAAC CTAAACCTAT 
ACNATAGAAA CATGTTTCTT GAAATTATTT TTATGTTAAG CACTAATTTC 
TTGATAATCA GTCTTATTCT GAGATC

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1825865 [Map]; Strand: c
  - AT3G06040.1 - [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family...
    Distance: -202; Region: promoter
  - AT3G06040.2 - [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family...
    Distance: -237; Region: promoter
  - AT3G06040.3 - [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family...
    Distance: -223; Region: promoter
Flanking Genome Sequence: 54-4712-1 - 3-prime edge
```
CTCAAGAGCA GCACCTAGTT CATCTATATA CCTTCATACT CCACAAGCAA 
TGGCTTTATT TGGCATTGGG TTTGAAATAG GTGGCTCCGG ATTTTAGTCA 
AATGAAAGAG CAGCTTGTGA TTGCAGAAAC AGATC
```

AT3G06040.1

Model type: Protein coding
Short Description: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Computational Description: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8332 Blast hits to 8332 proteins in 2728 species: Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06040.2

Model type: Protein coding
Short Description: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Computational Description: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06040.3

Model type: Protein coding
Short Description: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Computational Description: Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8332 Blast hits to 8332 proteins in 2728 species: Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).
Link: InterPro Scan - TAIR