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54-4742-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5530802 [Map]; Strand: c
    Flanking Genome Sequence: 54-4742-1 - 5-prime edge 
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TAGTCGCTAC CGATCTTGAA GTTCCGAAAT 
    CAGATATTTT TGCTCTGTAT TTCTCATCCA ACAGTATATT GGTAGTTTTG 
    ATATCTCTAT GGAATATTGG AAAAGATGCA GCTGAGTGCA TGTACGAAAG 
    AGCTCCTGCG ATCTCTACGG CTATGCGAAG TCGCACTTCC CAAGTCATCA 
    TGTAATCATC ATATTCATCA TGAAGCCGCT TGAACAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 158405 [Map]; Strand: c
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4742-1 - 3-prime edge 
    CCGGCGAGGA TCGAACGGTG GGAACCGGAG AGACGGTGGA ATTAGTGATG 
    AGAAAACGGT AAGCGAGACC GATCAAAAGG AAGAAAGCGA CGGATTTGAG 
    GAAAATTTGA TTGCGTTGGT GAGAGGAACC AAATGGGGTT CCTTCAATCT 
    TGATGCTCTT AGATATTAAT CTCAATGAAT CCATTGCAAT TAGAGAGAAG 
    AGCAGATCAC TGAGTTTTTT CAAATGTTTC CCTAATTAGC TTTCTGGAGG 
    TTTTTGGTTG GCGTTGAAAG CGAGGAACTT CATCATTGTA AAAAAGACAC 
    AGCGGATC

AT1G01430.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 25
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16140.1

Model type
Pseudogene
Curator Summary
pseudogene similar to wall-associated kinase protein family
Link
InterPro Scan - TAIR