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54-4777-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640818 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -15; Region: promoter
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -559; Region: promoter
    Flanking Genome Sequence: 54-4777-1 - 5-prime edge 
    NGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG AGCAATTGAG ATGCTCTCTC TCAAAGTCAA 
    GGGTGATGAT TCGGCCCTTT CGGTTCTATT TGGGCCTTTT CGTCATTTCT 
    CGGCCCATTT GAAATGTCCA TTTATTTTTG TTGGTTTGAA GTCAAACNGG 
    TGGAATATAG AATTTCTTAG AATACACACA ACACAGATTC TTTTCTTCGC 
    ATGTTCCGGC GGCCATCACG TGTAGATTAG TAATTGTGAG CAGCAGAGCT 
    ATGATAAGAC TAAGACACGT TTGGATTTAT TAGATAATGC AATTAGGCTT 
    GTTATTAAAT ACGAAACAGA AACATGAGTA GGTAAGACCT CTTCAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640757 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -620; Region: promoter
    Flanking Genome Sequence: 54-4777-1 - 3-prime edge 
    GTCTCCATGA AGAAGCGCAT GTGGAGAATC TCACTGATTT CCCAGATATC 
    TGATCTGCTC TGCCTTTCCC GTGGCTCTTC TGCAACCTTG AAGACTCTGA 
    CCCCATTCTG CTTTACCCTC TCCAGGTCTC CCTTCCACCA ATCCGGGGGC 
    GATGATGATG CTTCGGGATT GAAAAACCAA TTGTTGCGCT TCCGTAATGA 
    TTCCGGTAAA GTTGCCTCCG TTTTGGAGAG GAACAAAATC CAAGGAGCTG 
    CGTTTGTTGA GCTCCTTAGG CAGTTACGTC CATGGCCCGT TTTGTCCCAA 
    CTGGTATACA TACATCTTTT TTGTCTTCGA ATTTCACAAC CACAAAAGAA 
    AAAGCCTTTT TTCCGTCATG TTTGATGTTG TTGCTTTGCA GGTGTTCGAC 
    TGGAGAAGAA ACAAGGCACT ATGCGATGGG TTGCCTATGA CTGCTGATGA 
    ATACGCTAAG GGCATTACCA TTTCTGGTAG ACTGAAGAAT GTCGATTTGG 
    CCCTTTCCTT GTTTCACGAG TCTGCAAACA AGACCACCTC CGTCTACAAT 
    GCTTTGATGG GTGCTTACCT CTGCAACGGT TTGTCTCATC ATTGCGAGCA 
    GCTCTTCCTT GACTTCAATT CTCAACAAGA CGGACCCTCC TCTTCTACTC 
    CATCTGTCTC TACTTACAAC ATCCTCATTT CTCTTTATGG CCGTTTGATT 
    ATGGNTGAGC GGATGG

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48010.1

Model type
Protein coding
Short Description
receptor-like kinase in in flowers 3
Curator Summary
receptor-like serine/threonine kinase (RKF3)
Computational Description
receptor-like kinase in in flowers 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11050.1); Has 112833 Blast hits to 111726 proteins in 4356 species: Archae - 97; Bacteria - 12546; Metazoa - 41926; Fungi - 9138; Plants - 32648; Viruses - 383; Other Eukaryotes - 16095 (source: NCBI BLink).
Link
InterPro Scan - TAIR