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Mutant Lines
54-4778-1

54-4778-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 24139398 [Map]; Strand: c
- AT5G59950.5 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -541; Region: promoter
- AT5G59950.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -699; Region: promoter
- AT5G59950.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -699; Region: promoter
- AT5G59950.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -784; Region: promoter
- AT5G59950.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -797; Region: promoter

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCTT TCCACACAAA ATTAAATAAA TTAAACACTC 
AATCAACATG ATCTAGCTGA AACCATATCA GAAAAACATG AACGAGAACA 
TATGTATACA TTGTCTTCAT CACAAGCTTT TAAGATGATG GAGACCTTGC 
ATCGAGAGCG ACACATGCTG CATAATGGTC GAGTGTTGTG ATTGTTAAGA 
ACCACATAAA ATTTCTTTCC CCCAACAGTA TCAACCATGC GTCCTGGCAT 
GAGACGTGAG AAATCTCCTA GTACGCATTC CACATGCAAT GTGACTCCAC 
AATCAAAGCT NGTNTAGAAC CATTTACTTG GATCTAACTC TGACTCGCAT 
ATNTNGCACC AATACTTTNC ATTCGCCGTT NCACCACTNG ATAGAGTGAG 
AGGGNGCNCA TCNTTTNTAT GNNGGGNGNN TAATGGCNAA CTAGCGCANC 
TTNTTCNNGG GTCAAAGGNA CNNGCATTGC AACAAAGNGT NTGAACCGTT 
NCCTTAANGC ATGCATTGCN CGANNNNTTT TGNTGGGATN CNAAGGGNGG 
GGNTNCNNNT GGCCATTATN ANCGNGGGGT GGGNGNGNGA ACCNNAANGG 
GGNGGATNNA AAANNCNNNG GGGNGGTNTT TTTNCCCCCN NNNGGGGGNG 
GNCGNGNNAC NGGGGAGGGG GGGGNGGGGG NCCCNNCNCT NGNTNNNANN 
AAANNGAANN GNGGGGGGGG GGGGGGGGGG GG

3 prime edge [+] show sequence

Chromosome: 5; Position: 24135790 [Map]; Strand: w
- AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

NTTTTAANGN NACTGAGGTA TTTTTTCGAC CGTTACCGAC CGTTTTCATC 
CCTTCAGATT AGCACACTTT TCATGAAGAA TGAAACAGCN TTCCTCACAA 
TTGTATATTC GACCAAATTC GACTGGATGG CCACATGCTT CACATCGTGT 
ACTATCATCA TAAATGATAT TGTTCTTGTG GAGTCTTAAA GAATGTTTGC 
TGTGACTAAA ATGACGAATC AAGTCATCCC CAACCACCTT AAATGGCGCA 
ATATCCTCAA TATTCTCAGC TTTCCCTTCC AGTTCCACAC CATCCCATAT 
GTCATATCTT GTTGCACACC GTGAATGAAC TGCATAGTTG GGGCAAACTA 
AGCAAGAATA AGCTCCATTG AATTGGCATA CACTTCTTCG GCAAACTCCA 
CAGTTCAAAT ACCCAGGACC AAGATGCTGT GTGAAAGAAA TGCGATGATC 
ATGACGATTT ATGTTCATGA CTTGAGGTAA GTCTACACAA CTACAATGGA 
CCGCAAAACC ACACTGAAGA CACATATCAG AGAGTATAAG TCCTTNTACC 
CCACAAAACG TTNCAAGTGC AGNANGACTC CTCTNGGAAA GAAAGTAANA 
GGATGCTTGT GCGTCTNCAC ATTCTCNACA ACAAGAGGTG GNGGTGATTN 
GATACAACCC ATGCACAGTG TGAANTNTNN GNATAAANCA ATGATAAAGA 
ANACCATGCA GAGTGTTGCC CACNTANGAG AACNAAGTNT TGTTAACATT 
AACNGAAANA AAATAA

AT5G59930.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.1); Has 10964 Blast hits to 9767 proteins in 726 species: Archae - 14; Bacteria - 1131; Metazoa - 5027; Fungi - 1686; Plants - 1961; Viruses - 34; Other Eukaryotes - 1111 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.4

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59950.5

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2).
Link: InterPro Scan - TAIR