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54-4780-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7764707 [Map]; Strand: c
      • AT2G17870.1 - [+] show detail - cold shock domain protein 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4780-1 - 5-prime edge 
    GTGGTGATGT GGGACACTTC GCTAGGGATT GTAGGCAAAG CGGTGGTGGA 
    AACAGCGGCG GAGGAGGAGG AGGTGGTCGT CCGTGTTACA GTTGCAGGTG 
    AGGTTGGTCA TTTGGCAAAG GATTGTCAGT GGTGGTTCTG GTGGAAACAG 
    ATACGGAGGA GGTGGTGGTC GTGGATCTGG CGGTGATGGA TGCTACATGT 
    GTGGTGGTGT GGGACATTTC NCTAGGGATT GTANGCAAAA CNGCNGTGGA 
    AACNTTNGAN GTGGTGNAAA CACNTNGNTN TACCTGTNNC NNANNNNNNC 
    ACNTTTNNAN ANNNNNNNCC ANNNNNATNC NTNNNNNT

AT2G17870.1

Model type
Protein coding
Short Description
cold shock domain protein 3
Curator Summary
Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance.
Computational Description
cold shock domain protein 3 (CSP3); FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: response to cold, DNA duplex unwinding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold shock protein (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 72472 Blast hits to 41123 proteins in 2889 species: Archae - 51; Bacteria - 27281; Metazoa - 11105; Fungi - 2852; Plants - 6181; Viruses - 14957; Other Eukaryotes - 10045 (source: NCBI BLink).
Link
InterPro Scan - TAIR