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54-4785-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222530 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4785-1 - 5-prime edge 
    CTCAGTACTC TCTGCTCTCA GTTTCACCTT CGCGAGAACC AAAGGCCTAG 
    CACCGGAAAA TGTAGAAACA CCACGCCAAT CTCCAACGCT GAACGGTAAC 
    GAGCTCCGAG CCGATACTCT CGTCGGAGCT CCAAGCTNTN AGANNNGGNA 
    GNAANGCANG CNGGCGNTAT NGAGTCGAAT ATGACTTGAT GTCATGTGTA 
    TGATTGAGTA TAAGAACTTA AACCGCAACC AGATCTTAAA GGCGTAAGAA 
    TTGTTTCCTT GTTAGAAGAC ACAAAGCCAA ACACTCATAT GGACTTTGGC 
    TACACCATGA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222601 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4785-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATACT 
    GAGGAAGATC GAGTTCCAAT TGATGACGAC GACGATTCTA CTGATCAGCT 
    CGTAAGTGTG GAATTTCATT TGGATGATTC ACTCGTTTGT GACCAGAATC 
    AATTTTACTC TTCGTTTTGT TAGGTTGATG AAGAAATTGT GCATTTCGAA 
    GAGCGTGATT TTGCTGGCAC AGCGTGTGTT CCTGTATATG TTATGCTACC 
    AGTGAGTCTT CTTTTGATTT TATTTTTGTT GGCTAGAGAT TTGTGTGTGT 
    GTTTGGTTGA TTTGGCTGTT GAATGATGTA GCTGGGAGTG ATTGATATGA 
    ACTCGGAAGT GGTGGAACCG GAGGAGCTTT TGGATCAGTT AAGAACTTTA 
    AAGTCGGTTA ATGTTGATGG TGTTATGGTT GACTGCTGGT GGGGAATTGT 
    TGAGTCACAT ACACCACAGG TTTATAACTG GAGTGGTTAC AAGAAACTTT 
    TTCAGATGAT TCGTGAGCTT GGACTTAAGA TTCAGGTAAT GTTATTTGAT 
    CGATGAGTCT CAGTTCAGTT TANTGAAAGA TATGCAGAGT TGAGGATGAA 
    CCTTTTTAAA GTGTTCTTGA CTTGAATTGA CTTCANGTTG TTATGTCNNT 
    TCACGAATGT GGAGGCNNTG TTGGANATGA TGTGCNTATA CAAATNCCTG 
    ATGGGTGANA NAAATNGGNC NAAGCNNTCC TGACNTNTAC TTNCTGACNN 
    NGCTGGNNNG CNTACACTGA ATGCCT

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR