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54-4788-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19568153 [Map]; Strand: c
      • AT2G47760.2 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47760.3 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47760.1 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: -311; Region: promoter
    Flanking Genome Sequence: 54-4788-1 - 5-prime edge 
    TTCATGGCGG GCGCCTCATC ACCGGCGAGT TTGAGAGCTT CTCGTAGCCG 
    TCGGCTGGGG AAGGAGACGA ATCGATCCGA TCTATTCAAA AAACCTGCAG 
    TTCCATTCGC ATTCGCGCTA ATTCTTGCTG ATGCAATCCT AGTCGCACTT 
    ATTATCGCCT ATGTTCCATG TGAGAGCTAT TTACCTCCTT TTTTTTTTNG 
    NTGGNNTNNC CCTCAAAAGG GNCNTTGGNN NNGGTTTAAA NCNAANTTTC 
    GNANTTGNCN TTNAANAAAC CCAAAAATCN NTGGGNANNN TNANNNGTNA 
    NNGGAAAGGG NAAAGGGNAA ANNGGGGTTT TTTAAANGAA ANCTAGNNGN 
    NTTNAAGGNA AATTNNTNNA NTGGGGGCNG GTNAGGGGGT TTNTGGGGGG 
    AAAAAAAAAN TTNGGNANNT NNAAGGGNAA NNCNGGNCCT TGGGTTNNNC 
    NANNNGGTTC CCTTTNNGTT ANCTNGGNNG GGNAAAANTN ANNNGGGGGG 
    GAAAGTNNNC CNNGNTAAGG GNCTNGNAAT NCCNTNTTTT NAAATNNCCT 
    NTTTTGGNAT AACCNGGGGA ATTNNANCNA NCNANCNNTA ATTGGNCNAA 
    ATNNNNCTTT TTNAANTTTG GNAAATNNTT TTGGGGGNNN TNNNNNTGGN 
    NAANNGGGGG A

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19568232 [Map]; Strand: c
      • AT2G47760.2 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47760.3 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47760.1 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: -232; Region: promoter
    Flanking Genome Sequence: 54-4788-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    AGCAAATCGC ATCAGCGTCT AGCCAACGCC GCGTAACAGA CAACTACTTC 
    CATATTACTA CTCTTCTAAT TAGCCCAAAT TAAATGAGCC TATTGGGCTT 
    CTTGTCTTAG TCGGTGTAGA GCCCAATTGT TGTTTTATTT TTTTAATAAT 
    GCAAAAGTAT TAAGCGATAA ATAAATAAGC ATCGCAATCG TCCCAAAACT 
    GTGTGTATGC ATCAGACATG AGCATATAGA GTAAGCACGT GTCCACACTT 
    TTTCACAAAG TTATCTAAAA ACAAAAAACA ATTAATTAGC ATTCGACGTG 
    TACATATCAC TCGCCACGTG TACAAGAGCC TTGGCCTTTT TGCTTCTTCT 
    TCTTGTCTAT TAATATCATC TCCTGATTAT ACTCTCTTTT GACCAAGCTG 
    CTTCTTCTCC ATCGATCCAA CATCTCAAAT CTCAGTAATC TTGTTCCTTC 
    GATTCTGTTT TGGACGTTTG TAATGGATTC TCAGGACATC AGATACCGCG 
    GCGGAGACGA CAGAGACGCT GCAACGACGG CTATGGCCGA GACAGAGAGG 
    AAAAGCGCTG ACGACAACAA AGGAAAACGC GATCAAAAGA GGGCGATGGC 
    GAAACGTGGT CTCAAGTCTC TGACGGTAGC GGTTGCGGCT CCTGTGCTCG 
    TGACGCTCTT CGCTACGTAT TTCCTCGGCA CAAGCGACGG ATACGGGAAT 
    CGAGCTAAGT CCTCGTC

AT2G47760.1

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 381 Blast hits to 338 proteins in 173 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 152; Plants - 35; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47760.2

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47760.3

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47770.1

Model type
Protein coding
Short Description
TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator Summary
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational Description
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR