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Mutant Lines
54-4829-1

54-4829-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 23835799 [Map]; Strand: c
- AT1G64235.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
  Distance: -450; Region: promoter

CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC CAAGAGTATG ACGAATGAGA TAAGCAACAA 
TGCTACAATC TTCATATATA GTAGTTTGTT TAGATACTAG GCAATCTTTA 
GGGGTTGACA CTTTCTTTCT GTCAAGGAAT CCTCTACAGC AAATTGTTAG 
GATCTGATTC CTATTATTTT CATACAAGGG CAAATTTCGA ATCAACATCT 
TCAAAATCAA GCAATTTTTA TTATATTTTT CTGCGAAAGT GCTTTTATTT 
CAATATTTTC TCAAACACCA AATTTTTTTT TTTTTTTTTT NGGGGGGGGG 
CCCCNNTNAA AAATTTTTNA NNNTTTTNAA ANAANNTTTN NNGGGGAAAA 
NCCNAAANNT NCCCCCNTNN NAAAAAANTT TTTTTTTNAA AANTTTTNGG 
AAAACCNTTA AANCNAAAAN GGGNANNNTG GGGGTNNNAA ANNGGNAANG 
GGNNNTTTTT NTTTNAAAAA AAAANGGGTT NCNNCNAANG NGGGNNAAAN 
CNTGGGGNTN NNCNTTTTTT TNGGGNAAAN CCCNTNNGNN AAAAANCC

3 prime edge [+] show sequence

Chromosome: 1; Position: 23835266 [Map]; Strand: c
- AT1G64230.3 - [+] show detail - ubiquitin-conjugating enzyme 28
  Distance: 0; Region: exon6 (3UTR)
- AT1G64230.5 - [+] show detail - ubiquitin-conjugating enzyme 28
  Distance: 0; Region: exon6 (3UTR)
- AT1G64230.1 - [+] show detail - ubiquitin-conjugating enzyme 28
  Distance: 0; Region: exon5 (3UTR)
- AT1G64230.4 - [+] show detail - ubiquitin-conjugating enzyme 28
  Distance: 0; Region: exon6 (3UTR)
- AT1G64230.2 - [+] show detail - ubiquitin-conjugating enzyme 28
  Distance: 0; Region: exon5 (3UTR)
- AT1G64235.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
  Distance: -983; Region: promoter

GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCAGTC 
TTGGTATCAT TTCCTCCTCA GACAAAAGCT AACTGTTCGA GCAGCAGTAG 
TTCCAAGAGG GATGGAGAAC AATGTGTTAC AACCCCGCAA AAATCAATGG 
CGCTTGGTCT TTGATTCGAC GGTATTGCTC GTGGAATGAA GCNTGCCGGC 
TTCATGTTGT GAGAGAATGA AAGAGCAAAG ATCATGTCTG TGTGATGCGA 
TTAAAGACCG CGGTGTCACC CTTGCTAGCA ATGTCCTTAG CTCTCATCTT 
AAGTCTTGTG GTATTCCTGA CCCCAAATGT TGAAAATGAT AACAATGTGG 
TGCGAACACG GAATCATACC TAAGATGATA CGTTGAGCGA TCTTTGACAC 
TTTCTTTTCT TCAGTTTTTC TACTATAATA AGTAATAGCC AATATGGAGA 
AGTGGTCTTC TAGTGTTTAC TGGTTAGGAA CATTTTCTCC ACCTTTATCA 
TTTCCTTGCT TGTAAGGGAT CAACGATTCC ATATGTGTAT TAAATTAAAA 
ATACCTCAAA TCAAAGAATA AAGGTACACT TTATCTACCA TTGAATTAAG 
TTACCTCATT ATGAAATGGA AAGCGAAATC AAAAGGCATA TTATTACGAA 
ACAATAAACT GTAGATTTAT TGGTTAGCTA GATCATCCAA CTTTTCATTC 
AATCTGAATT TTCATTTAAT TTATGATGAT TTGAATGTAA AATCTGTAAT 
GATGGTGTAT TATTATTAAC CAATGAA

AT1G64230.1

Model type: Protein coding
Short Description: ubiquitin-conjugating enzyme 28
Computational Description: ubiquitin-conjugating enzyme 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 10654 Blast hits to 10613 proteins in 404 species: Archae - 0; Bacteria - 4; Metazoa - 4603; Fungi - 2343; Plants - 1945; Viruses - 27; Other Eukaryotes - 1732 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G64230.2

Model type: Protein coding
Short Description: ubiquitin-conjugating enzyme 28
Computational Description: ubiquitin-conjugating enzyme 28 (UBC28); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G64230.3

Model type: Protein coding
Short Description: ubiquitin-conjugating enzyme 28
Computational Description: ubiquitin-conjugating enzyme 28 (UBC28); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1); Has 10537 Blast hits to 10496 proteins in 399 species: Archae - 0; Bacteria - 4; Metazoa - 4600; Fungi - 2215; Plants - 1971; Viruses - 26; Other Eukaryotes - 1721 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G64230.4

Model type: Protein coding
Short Description: ubiquitin-conjugating enzyme 28
Computational Description: ubiquitin-conjugating enzyme 28 (UBC28); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5); Has 10460 Blast hits to 10419 proteins in 398 species: Archae - 0; Bacteria - 4; Metazoa - 4543; Fungi - 2213; Plants - 1965; Viruses - 26; Other Eukaryotes - 1709 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G64230.5

Model type: Protein coding
Short Description: ubiquitin-conjugating enzyme 28
Computational Description: ubiquitin-conjugating enzyme 28 (UBC28); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 8 (TAIR:AT5G41700.5).
Link: InterPro Scan - TAIR

AT1G64235.1

Model type: Protein coding
Short Description: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G57310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR