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54-4830-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460344 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -720; Region: promoter
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -713; Region: promoter
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -720; Region: promoter
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -720; Region: promoter
      • AT5G66211.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -514; Region: promoter
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -808; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -833; Region: promoter
    Flanking Genome Sequence: 54-4830-1 - 5-prime edge 
    CNGGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATAAGTAAGG GCTCAAATTA TATTTTAATC 
    ATGTATGGTA TAAGAAGAAG AAATTGTTTG AATTTTTTTT AATGGGAAAA 
    CCAAAGTGTT TTTATGATGA CGGGAGGCAC TTACNTTGGC AGTATGAACN 
    TGAAACTGAT TTTTCATTAT TTTTTTACTT GTCCAGATTG AAAAACGTGT 
    GCATGACCAT GTTATTAAAC AAATACTACT ACTTCACCTA ACGTATTTTA 
    ATGTTTGTTT TGTTATACAA CTTGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460278 [Map]; Strand: w
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -654; Region: promoter
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -647; Region: promoter
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -654; Region: promoter
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: -654; Region: promoter
      • AT5G66211.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -448; Region: promoter
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -874; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -899; Region: promoter
    Flanking Genome Sequence: 54-4830-1 - 3-prime edge 
    CGGGTAGAAG AAGGAAAAAA GTATCGGAAT ACGGTTGTGC GTTGGAATGG 
    CACGTGAATG TGATGCAGTG CACCGTCAGT GACCGGATTT GCAAAAGAGA 
    TAATTTGTTA CTTTCCTCTG GGCAAAATTC AATTCTAAGA AGTCGAACCA 
    GTAGAAAAGA AAAAAGAAAA CGTATACGCC TTAGATTGTA TTATAAACAT 
    TACTAAATAT ATATAGACGT TTTAGAAAAA TGGAAATCTT GTTTGAAAAG 
    ACCAAGTCAA TTTAGTAGAC CAATAATCTA AGGTTAAAGT AATCTCAGTT 
    TGAGTAGGGA TTGAAGACAG GGACTTGAAT ACTAGTACAA AATACACAAA 
    AGATCCAGGC TAGTAGGAGG AGGCTCTACT AAAATATGGA GTTTGTTAGA 
    AAGTAATAAA TGAGAGACAC AGAGTCCATA ATAATTTAGT GGCAATAAAT 
    AATGATAATG GCAAACTCTG AAGTTGAATC GAATTGAGTC TTACCGGGGG 
    ATGGTGTCGG GCCCAAACAT GGAGCTTCCC ACATCCCACA GGGGTGGTCA 
    GTCAGTGGTC TTCGCTTTCA CACCAAAATA CAAATTCATT ATTCTTGACT 
    TCGTGAAATG ACAGTTAAAA TTCTCAGAAA TGTATAACAA CAAAACAAAG 
    GTAAAAAAAC ACAGATTATT ATTATTAAAA AAAGAAGAAG AAGAAAAGGC 
    AAAAAAGTGG GAAAGTGAGA G

AT5G66210.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 124563 Blast hits to 121753 proteins in 3731 species: Archae - 157; Bacteria - 14240; Metazoa - 45960; Fungi - 14836; Plants - 27830; Viruses - 455; Other Eukaryotes - 21085 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.2

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.3

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 122907 Blast hits to 120110 proteins in 3700 species: Archae - 157; Bacteria - 14345; Metazoa - 44968; Fungi - 14295; Plants - 27583; Viruses - 455; Other Eukaryotes - 21104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.4

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66211.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66220.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 378 Blast hits to 377 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66230.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link
InterPro Scan - TAIR