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54-4849-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17661210 [Map]; Strand: w
      • AT4G37580.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: 332; Region: intergenic
      • AT4G37590.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 1632; Region: intergenic
    Flanking Genome Sequence: 54-4849-1 - 5-prime edge 
    CNNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA GGACCACACT TTTTCCCCCA AATATGGTCC 
    AAAGATGTTC AACTGATAGA TTTATATGTT TCTTTTGTTG GTTTGCGGTA 
    GCAAAAGCTA TATCATGATG AAACCTTTGA ATCGGGTTTG AGAACGTGTC 
    CTTGTCCGAA AGAGGTATTG TCGAGTCGAG AGCACCGATC GAGTCAGGGA 
    AATTGTTTAT ACTATAAGGT CTTGACCATC ACATAATAAG ACATGTGGAT 
    AACTTCGATC GAGGAGTGAT ACTTTGTGTT TGTGGATTAG ATTTATCATT 
    TCTGTTATAA CGATTGGTAT ACATGTGTGT ATGTTGACCC TAGGTTTGTT 
    TTCTAGTGTC GTGAGTTTCT ATAATTACAT CTTGCATTTG TTGGCAATAT 
    ATATGTAACT ATGTAAGGAT GTTATCATCG GTTAATCCGA ACCATATGAC 
    AAGGTTCTAA TAAGCAATGG AGACGACTAG TTGCGGACCA TCTTGTGGTT 
    CACCGACATA TAATTTTAAT GGTTTTAAGC TAATGAAAGA AAATCTAAGG 
    GAAGTTAGGT GATAGTCTTC ACGGAGTTCT CAAGTAGACG ATCATGTGAA 
    TCTCAAGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17661195 [Map]; Strand: w
      • AT4G37580.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: 317; Region: intergenic
      • AT4G37590.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 1647; Region: intergenic
    Flanking Genome Sequence: 54-4849-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    ATTCATGTCA TTTACACGTA AGATTAGCGA TATCAAAAGA AGTTTTTATT 
    CTCCAATCAC TATCAAATAT CAATGATCAA ACTCGAATTA GCAAAGTACT 
    AAGAACCAAA ATCCTCCACC TAAAAAGAAC TACTAAACTA ATATACATAA 
    TATTTTATTT ACTCTTAAGA AAATGTGCGT CTTTCTCTTA GTTTATACTT 
    GATGGCACAC ACNGATAATG CTAATCGTTA TTGGTAACAT TTTCTATCAT 
    TGTCATAATT GTAATTTTAT CTCCAAAGTA TCGTCTTAAC ACAAATTGCA 
    TCATTATACG TATCAGTGCG TTCATGAAAT TTTATCTACT TGGAAATAAT 
    AATCAGGTCG GCGTTTTGGT TTGGCCACAA AGAAAAAGTA TCTTAAAAAG 
    CTAGATCCAT TTACAAGACA AGAAGACACA AACCCAAAAG TAGGAGATAT 
    TACCTCTTAC CACTAATTTA TAACACCCAC AAAAACAAAA CAAAACAAAA 
    CAAAAAGCAA AAAAAGTTAC CTAAAAAAAA AGATTAATTC TAAAACAAGA 
    AAATCTATAA ACTTAGAAGA AAACCCCTAA TTTAACATCA AGTGGTTAAT 
    AGAGAATATA TATTATAGAG TTAAAAAAAA AGTTTTAAAA TTCTCTAGGG 
    TCTACAAAAA TGGAAACGCC AGGNGGCGAT TTAGTCCAAT CACCAACACA 
    CCATCACTAT AGTCATTTCC AGCCGCTTTA TACC

AT4G37580.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Curator Summary
involved in apical hook development. putative N-acetyltransferase
Computational Description
HOOKLESS 1 (HLS1); CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT2G23060.1); Has 145 Blast hits to 145 proteins in 38 species: Archae - 22; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37590.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Curator Summary
A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
Computational Description
NAKED PINS IN YUC MUTANTS 5 (NPY5); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT2G23050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR