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54-4872-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9694457 [Map]; Strand: c
      • AT2G22780.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 1
        Distance: -2303; Region: intergenic
      • AT2G22790.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1475; Region: intergenic
    Flanking Genome Sequence: 54-4872-1 - 5-prime edge 
    GGTCAGTATA ATGTCAAAAT GTGTAACAAA CGACCAGCTC AATAAAAAAA 
    GGTTGAGGTA ATTTTGAAAT ATTTCTGTAA TGTCATTAGA ATATTCTCGG 
    ATGTATAAAA TCAATGACAA ACATTAAATA TATGACNGTT AAGATGGAGA 
    AAACCGAGAA AGATTTTGTA GGTTTATTAT TTGTTTCAAT TATAAACGAA 
    TCGCCTCAAC CTTTTTTATA TTATGACGTT AAAAACCCCG TAAATATTAT 
    CATAAAAGCC CTCAATATGA TCAAAGTACA TGCACTTCAA TTTTAAGAGA 
    CATGGATGAT GGATCTTACG GTGTTATAGC TAGAGTTGGC TTATATTCTT 
    AAATAGAACT ATACATCGTT TTTTTTTGTT TCTTCAACAG TAAATGATAA 
    AATAGGTACC CAACATGACA ATTGGCTAGC CAAAACTGAG TAATATTATA 
    CATGTCANAT ACTCGGTTTT AGGATATAAC AAGCAAAGAA CTTTAAAAGA 
    AAAGAGATGA GAGTTTATCT ACCAACATCA AGAACGAAGG CCATTCCTAC 
    ATAAACCTCG TCTAANAAAC TATATATGAA CAAATTGTCT TTAAATCGTA 
    GGAAGAAACT ATATGGCTCT AGATATTTGA CTATCCCAAA TTTANAGATT 
    TTACTCATGA GTGCAAAACC GAAACATCTA CTAANATTGG GCAATTTACT 
    TGTACCCTGG CTTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9694573 [Map]; Strand: c
      • AT2G22780.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 1
        Distance: -2419; Region: intergenic
      • AT2G22790.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1359; Region: intergenic
    Flanking Genome Sequence: 54-4872-1 - 3-prime edge 
    TACTGACCGA TCCAAACAAT TATTTTCCAA TGAATTTTAC TTTCTATCTA 
    ATCAAGAGAC AATCAAGGTC TTTAATTATA CGGGGCATAT CCCCATTTCT 
    GCTGCAAATG CGAAATCACA GATAAACATA AGACAAAACC AACCCATGAT 
    ACTCAAAACC GACACATTCT GTTTTCAATG ACATATATTT TGGATACCAA 
    AAGCTAAACA GATCGAATCT CTCAACTAAA ATAATCAAAT AAAATCCAAA 
    AAGGAAGATT AACTTTTAAT CGCCTGTCTT AAAAATATTA AAAGTTAATC 
    GTCTGTCTAA AATCCTACCT AATCAGTATT TTGAAACACA AAAGGTTTTT 
    CATCATTCTA TATTCTTAAA GCGAAATACG AACTTAGTTT TACCATCAAA 
    ACAATTGTAT TTTTTGTTTG AAATACTCAA AATATTTTTA TGAAAAACTA 
    TTTATTTAGA TTCAACTCTA ATATCTTTAT ATCATTTTAT TAAAAAATTA 
    TGAGCATTTA TAAAATTAAT AACAATTTTG TTTTTGGTAA ATGGCAAGAT 
    CGAGTTCATT GACATGTAAA TTATTTTTAA ATCTTATCTT TTTTTTTTTG 
    GGGNANGTTT AAAANCTAAT NTTGGAANNC AAANNTTTNT GGNTTAACCT 
    TAATCTTAAA AAAATTTTTT TGGAAATTAA CAANCCGGGG CGGNNCCCGN 
    GNNCNNTTNN NA

AT2G22780.1

Model type
Protein coding
Short Description
peroxisomal NAD-malate dehydrogenase 1
Curator Summary
encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description
peroxisomal NAD-malate dehydrogenase 1 (PMDH1); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 2 (TAIR:AT5G09660.1); Has 16991 Blast hits to 16989 proteins in 5457 species: Archae - 237; Bacteria - 11827; Metazoa - 1259; Fungi - 489; Plants - 758; Viruses - 0; Other Eukaryotes - 2421 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22790.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 111 Blast hits to 111 proteins in 33 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR