Home
Mutant Lines
54-4883-1

54-4883-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20719450 [Map]; Strand: w
- AT1G55490.1 - [+] show detail - chaperonin 60 beta
  Distance: -285; Region: promoter
- AT1G55490.2 - [+] show detail - chaperonin 60 beta
  Distance: -254; Region: promoter
- AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: -98; Region: promoter
- AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: -98; Region: promoter
- AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: -125; Region: promoter

CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC CGCCTGGAAT AAAGGAAGTA TTTTTTTAAA 
AAAACGATGG AGAAAAAGGT AAACAAAAAT AATAGAAAAA TATAAAAAAG 
GGATCTTGGA GGTATTTGAA TCAAATCGAG GTGAACGAAC AAAACCACNT 
TTTGCCTCTT CCTCTTCTTC TCTCTTCTCT TGCGGCTACG ATTCAATCTC 
TTAAACCCTA GATTCCTTCT GAGTTCTTTT TTGCTCTGAT ATTTGTGTTT 
GTCTCAAACT CTTATTGTTC AATATCCGAC AAGGATCTAT TATCAGTCTT 
CGCTGCCAAC TCTGTTCTCA TGTCTACTGT TGCTCCTCCT GCTGATCGTA 
TCCTTTGCCT TTGTTTCTTT TCTCCTTCAT TTCTTTTGTG ATCTACGTTC 
ATGAATCTAG TTGCTTCATC GTAATTCGAT TCATATAGTG AAATGATGTC 
ATTTCCATTT GTTCTGTTTG TTTTAGCTCG ATGAATTTGA CTGTTCCTGT 
AGCTAGCAAA GTGAATAAAT TGATTAGAAA AATCAATTTT TTAGTCTTGC 
TGAAGATAGA AACCTATTTG TTTCCTTCAC TTACATTGTT TTTTCAGAAG 
CTGCTGATGT ATTGAAGAAA CTGTCTTTAG ATTCAAAGTC TAGGACTTTG 
GAGATCCCTG AGCCTACTAA GAAGGTAAAG TTACATCTTT TAATGTCTCT 
GCACATTTTG TTCTCCAAGC ANAG

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20719474 [Map]; Strand: w
  - AT1G55490.1 - [+] show detail - chaperonin 60 beta
    Distance: -309; Region: promoter
  - AT1G55490.2 - [+] show detail - chaperonin 60 beta
    Distance: -278; Region: promoter
  - AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
    Distance: -74; Region: promoter
  - AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
    Distance: -74; Region: promoter
  - AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
    Distance: -101; Region: promoter
Flanking Genome Sequence: 54-4883-1 - 3-prime edge
```
GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCAG 
AGTCAACATT AATATTAATT TCCAGCCACA TTAATATTAT ACTAGTCACT 
ACGAAATATC TCACAAAATA ATACTATAAA TATTATTTCC TCGAAAATTT 
CGCAATTAAT CGGGAAAAAA TCAATTTTTA AAATAAATAT CACTGATTCC 
AATTCCACTG TTAGGAATTA AGGAGCAAGA ATAAAGGCCC AAATAGGCCC 
AATATAAATC TGATCCAGGA TC
```

AT1G55490.1

Model type: Protein coding
Short Description: chaperonin 60 beta
Curator Summary: encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description: chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55490.2

Model type: Protein coding
Short Description: chaperonin 60 beta
Curator Summary: encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational Description: chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55500.1

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55500.2

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR

AT1G55500.3

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR