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54-4899-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26451626 [Map]; Strand: c
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron7 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 54-4899-1 - 5-prime edge
    CAGCTCACTG CTATACAAGG AGGTACACAA GCTGAAATCC TACCCACCTT 
    TACTAATGTT GTCTTGTACA AAAAAGCTGT TGTTGAATTG TGTGGATAAT
    GGCAGGAGTT TGAGAAGATG AAGGAGAAGA ACCCAGACAA CNTTCAGGCT
    GGACTTTGCG GTGAGCAGAG AGCAGACGAA CGAGAAGGGA GAGAAAATGT
    ACATTCAGAC AAGAATGGCA GAGTATGCAG AAGAGCTGTG GGAGTTGCTG
    AAGAAAGACA ACACCTTTGT TTACATGTGT GGTCTTAAGG GTATGGAGAA
    GGGTATCGAT GACATTATGG TCTCGCTTGC TGCTAAAGAT GGTAAGGACA
    TTGATTTCAT TATCATTTGA TTTTCAGAAG TCTGTGCCAG ATGTGTTTAT
    TAAACTGTTT TGTTTGGGGT GGGAACAGGG ATCGATTGGT TGGAGTACAA
    GAAGCAATTG AAGAGGAGTG AACAGTGGAA TGTTGAAGTC TACTAAGGAA
    GCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26451742 [Map]; Strand: c
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron6 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 54-4899-1 - 3-prime edge
    GTGAGCTGCT TGTGGGTACA CCCAAGAAAA GCCACGCCAA ACCATTGAAC 
    TGCACATATG ATTGGCAAAT TCAATTGGTG AGTAAGTTAG TCAGTGGTAT
    AATTGGCAAC AACAGTGTCT AGAGAGTTTG CTTTTGGTTT GACCTTGTAG
    TCCTCGTGCT CCTCAAAGAA CATTTTCCAC AAAAATGATC TGAATGGAGC
    TATTCCAGTT CCTGTTCCAA GCTAAGGAAA CAGAAAAGCA GAAGTAATCA
    CTACAAGTGT TGACTATATA CCACTAAATT CTGCTCTCTA ATCTAAGTGA
    GCACGCCAAT ATATGACCAT ACCATGATGA TGGTGGCATT GGGGTCTTTT
    GGCATAAGCA TTTCCTTGCC AACAGGTCCA GTGATCTTAG CTTCATCACC
    CGGCTTCAAG TCACCTGAAA AACCCAAACA TCACAAACAC TAAGAACAGT
    TTAAACCGTA AACGATCCAT CACAGACACA TTGTTCTTCT TTCTTACACA
    AGAAGTTGGA GCAGACCCCC TTAACAATCT CTCCGCCATC ATTTGTGTAA
    ACTAGTCTCT TGACACAGAG AGAAACCTGC AAAAGGATC

AT5G66190.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
ferredoxin-NADP(+)-oxidoreductase 1 (FNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66190.2

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 7407 Blast hits to 7407 proteins in 1806 species: Archae - 24; Bacteria - 3962; Metazoa - 817; Fungi - 811; Plants - 610; Viruses - 0; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR