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Mutant Lines
54-4900-1

54-4900-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 6946364 [Map]; Strand: w
- AT1G20030.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT1G20030.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
  Distance: 0; Region: exon1 (CDS)

GGTGAATAGC GTCGACGGGA AGGAGGGGGT GGCGATGGCG TGTAAAAGTG 
CGTGCGAGGC GTTTCGGCAG CCGGAGTATT GCTGCAGCGG CGCGTTTGGA 
TCGCCTGACA CGTGTAAACC GTCTACGTAC TCGCGGATCT TCAAGAGCGC 
GTGTCCACGC GCCTATAGCT ACGCGTATGA CGATAAGTCT AGTACATTTA 
CGTGCGCGAA ATCTCCCAAC TACGTCATCA CTTTCTGTCC TTCTCCCAAC 
ACCAGGTAAA ATTCCTTTAA TACCCTTCTT CTATTTACTT TCACCCATTT 
CGTTAAAAGG TGATTAGGAA ATATTTACTC TTTCATAAGT AGGATTTTTT 
TGCTTGTTGT ATAATCGAAG TTTTACTAGA TACTCAATTC CATTGATAAT 
CATTAATTTT GCTATACAAG TTTTGTTTTT CTTTCAAGAG TTTTATGATA 
GACATTGTTT GTCAGGCTCC TATAAAAGAG AGACACGTGG GAACTAACTT 
CATTCACTTA TTCCTTTATT TGCAGCTTAA AATCAGCTGA GGAACACAGC 
ACAGAGACAA TGACGACAAC AAGTCCAAGT TCCGGCAGTA CGACGTCNAC 
GCAGATGGTC TACGAAGGTG CTCTGGACGA AAGCAGTGGT TCACCATCTA 
CGTGTCACGG CGTATCACGA GCAATCATAG NCGTTCTTCT CTCNCTTGCT 
TTTTGTCATA T

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 6946300 [Map]; Strand: w
  - AT1G20030.2 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT1G20030.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 54-4900-1 - 3-prime edge
```
TTTAAAACGG TAGAGGTATT TTANCGACCG TTACCGACCG TTTTCATCCC 
ATAATTCACC CTTAGCTCCG ACGGACAAGA GCCGTTTAAA TCGACGACGC 
AGCCGGTGCT GCTGCAATTC TGACCGGAAC CGCCTTGAGG AACCACCAGC 
ATCTGGACAT TGTAGCCGTC GACGAGACTG ACATCGTAGA AATCGAGTCC 
TCCAGAGCCG TCGAGAGTGA ATT
```

AT1G20030.1

Model type: Protein coding
Short Description: Pathogenesis-related thaumatin superfamily protein
Computational Description: Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0; Bacteria - 45; Metazoa - 56; Fungi - 77; Plants - 1416; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G20030.2

Model type: Protein coding
Short Description: Pathogenesis-related thaumatin superfamily protein
Computational Description: Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR