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54-4924-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3121243 [Map]; Strand: w
      • AT3G10114.1 - [+] show detail
        Distance: 1218; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -4780; Region: intergenic
    Flanking Genome Sequence: 54-4924-1 - 5-prime edge 
    CTTCGGTACA CTAGAACAGT ACACTAGCCA AGATAGAATA CTAAAAACAT 
    TTAGGAAATG CAATGGAATT AAAAACTATA CCCTAAAATC CAAGATAGAT 
    TACTAAACCC CAAGGAAATG AAGAGGTCGG AGAACATGAT GCAGATATCG 
    GATGAAGAGG TCGAGTGACT GGCTCTCCCG GGGATCGACG TTGTCGTTTT 
    GCTTCCAGAG CCTGACGAGT CGGTATCGAA TGCTCCATGT ANTNCGTTTG 
    TNGTCACNTN TGGTTCGTCG CGGGTTCGTA TTTCTGATAG ATATNNANGA 
    GCTATCCNCN TANNTGNNNC GCCTACNGNT GNTGCACGAA TCTCTCAGTA 
    TTNGAATTGG GATNNNTANG GNGNGAAGAT GAANGTTTNN NTTANTGACG 
    AGCCNGANGG TTACGCTATT TGGACAGACC ACGTGNGATN ACTNGNTNAG 
    CGCNCNTAGN GGNGNANGAN NGNGCCGCNT GNNTATGANA NANGANCCGG 
    NCGCNGNGAG ACTACNCAGA GGGNGNGCGG TNGNATAAAT TTTCTTCTTN 
    NGGTNGCTNA ACTTNGTCCC TGGGGGNNTA GACNGCTNAN AAGGGAGGNG 
    NNGNCCCNTC CNGGNNGNGN GGGGNGCNGG AGCNCNTGGT TTATNTTNTT 
    NGNAGAGCGG GANNTNTNCC NCNNNNAANG GGGGNTTNGN CGGNNGNANC 
    TNNNANACNC CCNNNNGNNA AN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3121127 [Map]; Strand: w
      • AT3G10114.1 - [+] show detail
        Distance: 1102; Region: intergenic
      • AT3G10116.1 - [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
        Distance: -4896; Region: intergenic
    Flanking Genome Sequence: 54-4924-1 - 3-prime edge 
    TACCGAAGTG GTGTACTGTT CTAGTGTTCT CACTTTGTGT ACTATCATAG 
    TGTACGCATT TGGTGTACTA GTCTAGTGTA CTACGTGGTG TACTGTTCTA 
    GTGTTCTCAC TTGGTGTACT ATTATAGTGT ACCCATTTGG TGTACTATTC 
    TAGTCTACTT CTAGAATGTC AAAGTATCAA TCCAAATTAT AATACAATAT 
    ATTTCAATTC AAGTGTTATG AAGCATAATA ATAATCTAGG GTTATGATTT 
    TGAATTAGGA ATTTATTTAT TTACTTGGAA TTCTAAATTC TAGTAATCTA 
    AGGCTTTAGG GTATAGTTTT AAACTTCATT CCATATGATA TATGGTTTTC 
    CTTGGGTTTA GTCTTCTCTN TTNNACTTTT AGTGTANAGG GTGTGAANAT 
    CACTACATTT CAATAATGNA TNNCNNNTGN ATAGTGGGAN GGTNTAACNT 
    CTNNATTCCC CCNNAAATNC CNAANNTGTA AAAAAAANAN ATANCAAAAA 
    NAAAGNATTT TTGCACCAAA AANNGTGNNG GGGGNNAAAN AAAAAANNTN 
    NNATAAATTN TNNNANNCNT TNNGAAAAAA NATNNNNTTT NTNNANCAAN 
    CCGNANANNN NGGNNNGNNT TNTANTNNNN TGGGNCNAGA NNNNAANGNA 
    GNCCGNNNNN GNGNGGNNAA AANAANNAAA AAAT

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT3G10116.1

Model type
Protein coding
Short Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Computational Description
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); Has 64 Blast hits to 64 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR