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54-4956-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460653 [Map]; Strand: c
      • AT5G66211.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -823; Region: promoter
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -499; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -524; Region: promoter
    Flanking Genome Sequence: 54-4956-1 - 5-prime edge 
    CACACACCAG CGATATGCTG TAATGAAAAT TTTGAAGTTT GAGGAAAAAA 
    ATGATTGGGC CCAAAAGATG AAAGCGTATT GGGCCCGGTT GGTTGGGCTC 
    ACTAGTGATC ATAATTGGTG AGAGGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26460769 [Map]; Strand: c
      • AT5G66211.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -939; Region: promoter
      • AT5G66230.2 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -383; Region: promoter
      • AT5G66220.1 - [+] show detail - Chalcone-flavanone isomerase family protein
        Distance: -408; Region: promoter
    Flanking Genome Sequence: 54-4956-1 - 3-prime edge 
    GGTGTGTGCA CGGCATGCAT GAGAAGCTAA AACGAATGGT GGATATAACT 
    AACATATACA GCTTATACTA TACATGGTAT ACAAACAAAA ATGATGATCC 
    AAGCTAACCT ACTCACTCAT AGTTGTCCAT TTATTCTTTC TCAAAACAAA 
    ATCCCATACA CCAGACCTCT AAGTTCTAAG TCTACGACTA CGAGCATAGT 
    CACAATGTCT CTCGCCAACA GTCTCTTATC ATCAAGTAAG TTTCATTATT 
    TTCTCCCCAA TATCACTTTG TCGCATGCAT TTCCATCCAG TACTATTAAT 
    TGAATCTCTT TTTTTTTGGT TGAAAATATT CATTTCCCCA TCCAATCTCC 
    TTTAAAAATT AAAAAAAAAT TGGATTTATT TCTTTCAGTA AAAATGAAAA 
    AGTTGTAAAT TATAGTCTTC ATTAATCTTC ATGGACCTTA ATTATAAATA 
    AATGTCAAAA AAATGAAACT ANACTTGAGT NGGTCTTCCT CGTCGCCCAT 
    GCCGCTGCCT TCCGTGACGC CACTCCACGT NNA

AT5G66211.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66220.1

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 378 Blast hits to 377 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66230.2

Model type
Protein coding
Short Description
Chalcone-flavanone isomerase family protein
Computational Description
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66220.1).
Link
InterPro Scan - TAIR