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54-4957-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108352 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -175; Region: promoter
    Flanking Genome Sequence: 54-4957-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG GCCATAACCA AAACCACATA TCCAAACGTG 
    GTTTTTCATT TGGTACAAAA ACCCACACCT TAATTTCACA GACGAAATTT 
    TGGTTGATAA AAAGTAACCA TCTTAACCAG TCTCTCATTT ACCCCCACCA 
    GATATACATA TGCTTATTTA AACCGATGTA ACACAACTCT TCTTCACATG 
    GACCTCAAGT AAAATGGAAG CAAACACTTT GTTTCTTCTA AAAGCTCTTT 
    GTCTTCTTTG TTTTAATGTA TGCTTCACAT TAGCTTCCGA CCCTGATCCC 
    ATCCAAGACT TCTGCATACC AAAACCTGNG ACATCTCCTT ACCATGACCA 
    TGACTTCTCC ACCAATCNNG GNTTGCAAAA ACTCCTCCGA AGTAACCANC 
    GAAGATTTTG TGNTNGNCGN CCTAGAAACT GNCGGAAACT NGGGGGAAAC 
    AGGGGGNGNN ANCGTTCCAG GGGNGGGGNT TTCTTCCCCN NCCTTNNGGA 
    TNAAANATCT CGNCGGTCCN GANTGATGNN NGACCCGGAT GGGGGGGGNC 
    NGNACATNAA NNGANNNNGN TNACNGNATT TTTTCCCCCG GCNCNGGANA 
    NGGGNNCCCC CCNTTTTANA AAAANGGNAA GCACNCCCGC TGGGGGNGGG 
    GNGAANAAAA GAGGGGGNCT TCNTGGTNNT GGGANAAAGG AAAAAAAATN 
    NNTTNNNNCA ACCGGGGGGG GTTTTTTNTT NAAAAANGGG GGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108351 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -174; Region: promoter
    Flanking Genome Sequence: 54-4957-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    ATGGGAGTGG TTAGGCCGGT ACATTGACTG ATAAACCCCT TTTGTGGCTT 
    GATTGACACA TCTCTTATGA ATTTACTATT CGTCTATGTA ATTCATAGTT 
    ACAAATTAAT ACAATTGTGC ATAAAAATGG AAATATAACT TGGAGTCCAA 
    GGTTTCGGAT C

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR