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54-4983-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 292993 [Map]; Strand: w
      • AT3G01810.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 303; Region: intergenic
      • AT3G01820.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 761; Region: intergenic
    Flanking Genome Sequence: 54-4983-1 - 5-prime edge 
    CTTGTAATAC TCCTCGAGTC CTCGTCCTCG AAAGGAAGCA TCGGATTTGA 
    GGGGGTTTTC GAACATTCTC TTGGCTATTT CGAGTTGATT TCTCTTCCAA 
    GTTGTGTCGT CTCCATTTTT GTTGTTACAG TGGCCGAGCT TTTTGTTTTC 
    ACAGCGATTG GTTTACATTG GTTTTGAAAA TTCAAATTGA TCTCGGTTCG 
    GTTTACTTTT GGTTTAGAGA AGAAACCCAA AAGAAATAAG ACACGCGATG 
    GGTTTTTGAG AATGAGGTGC GTGGATCAAA AAAGGAATGA TTTTTGTGGA 
    TTCCCCTTTA GAAATCGTAG ACACGCGCTC AACTCGACAT GGGTGAGAGT 
    GGCCGTAAAA TCGAGCGATT GGTAAAAGTG GGGTATGAAG TGGAGCTCTC 
    TCATTGGTTG AGAAAATAAA AATAGTAGGG GAGCTCCTCC TCTCATATAT 
    TGAAAACAAT AATAAACACT TAAGAATTTT CTGCGTTTTC AGAGTGAATT 
    TTTATTGATG TGCATAGATT TTGTTTCATA TTTTGTGTAC TTTGTAGTTT 
    ATCAACACTT ATGCATCATT CAAAATGTAT ACCAACCAGT CAGGGGAAAC 
    CTTCANGAAG AAGATCAGAA CCAANGTATC ATCTGCGATG GAACCAGTTA 
    GGCTTGTGTC NGGTTCACAA GGGAGATTAT GATACNTTTT GGNGGNAGNN 
    AAANANAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11993133 [Map]; Strand: w
      • AT5G32345.1 - [+] show detail - transposable element gene
        Distance: 5869; Region: intergenic
      • AT5G32358.1 - [+] show detail - transposable element gene
        Distance: -1275; Region: intergenic
    Flanking Genome Sequence: 54-4983-1 - 3-prime edge 
    CNTGTTAGNG NNANCTAACG GATCGTTTTG ANGGGCNGGT CCATNAATCT 
    GCTGCTTCAT CTAAGGTTGC CTTGATCGAG TAAGAGGGTC GAGTAAATTG 
    CAGCCTCCTT TGTGGCATCC TGGNTCGAGT AAAGAGGTCG AGTGGAATGA 
    TGCCTCTTCT GTAGTTGCCT GGATCGAGTG AATGGATCNA GTAGAGTCCT 
    TTTAAGCTCG TTTTGCACCT GNANACACTN NTAANCNTGC GATGCAAATG 
    CAAAATGACC CTANATGCCT AAGTATGCAA AACAAGCTAA AATGGTGCGA 
    AATGATATGA TGCNATGAGC AAATGCGAAG CTAAATGATG ATGAACATAA 
    ACCTANAATG AGTNANATAC ANTGNTATNA CNTANTTNCT CGAGTAAGAC 
    ATCNNCGGTT AAGCATNTAC CGGTNGAATT CCANTGAGCT CTCNATGTTC 
    NCNCCGANAG ACTGATGATT GTNGGNCGNA TAATCTNGAT GAAGTANNGT 
    GNTNTATTNA AGACGGNATG ANCATGTAAA CNGAGNTCGT TGGATTCNAG 
    TGATTAAACG CNCNNANGNN TAAAGAAATT GNNTCCGNNN ATAAATNTGN 
    TTNGTAGATN ACNAAN

AT3G01810.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01820.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine kinase (TAIR:AT2G37250.1); Has 9469 Blast hits to 9393 proteins in 2915 species: Archae - 95; Bacteria - 5951; Metazoa - 891; Fungi - 419; Plants - 430; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G32345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.2e-183 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G32358.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.1e-59 P-value blast match to GB:CAB39733 rotease, reverse transcriptase, ribonuclease H, integrase (Gypsy_Ty3-element) (Drosophila buzzatii)
Link
InterPro Scan - TAIR