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54-4991-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 426313 [Map]; Strand: c
      • AT1G02205.2 - [+] show detail - Fatty acid hydroxylase superfamily
        Distance: 3875; Region: intergenic
      • AT1G02210.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
        Distance: 1235; Region: intergenic
    Flanking Genome Sequence: 54-4991-1 - 5-prime edge
    TTTAAAACNA CCAAAATCGG TTTTNCGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCGAG ACTATTTTGA TATGAACTTA TATATGTGAA
    TAAATTATAT ATTTGAAAAA GTCGTTTTGA TAACCAGATT ATTATTTTCT
    TTTAAAACAA AATATTATTT TATATGCNGT ACATGCNGTT AGATCGGTGA
    AACAACCCCA ATGAAAATAA TCGAATTGAT GAGAATACTT GAGAGTGAAC
    TATTGGGAGA AGCTCGTCTA AGCCATTGCA TTAATCTCCA CCTTAATCTT
    CGACCATGTT CTTGTTCTCC TTCAGCATCT AAAAATAGTC AAATATATTT
    CAAATTTGGT TATAAACTTC TCAATTTAAA ATCACATGAA ACTTAAAAAC
    AAAGTGATCT TGAAACTCAA ACCAAAGTGG AAATACAGTA ATTCAGTTTT
    ATCTGAACAA CTTGTAATAA AGACCAAACA AAATTAACCA AAATTATTGT
    TTTAAAAATA AAGAAATCAA TAGATAATTC TTCCAAAAAA ATAATTAAGA
    CTGAAAATGT ATAAATAAAA CATTTTTGGT TTACAAAGTT AAAGTATGAA
    CTTTTTGTAA GTAAATTAAA TAACCTGGGG GTGGTGAAGG GTATGGTCTG
    AAGCGAGACA CAGCGAGACA CAGATCTAAA GCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19647556 [Map]; Strand: w
      • AT2G48030.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 54-4991-1 - 3-prime edge
    TTGAGTGAGT AAGTACTACT GTACTCTTGT TTTTTTTTCT GTTTGTAGTT 
    TCTCAAAATG AGATTAATTA GCTTTCTTGA AAACGTTAGC ACTTACTGTA
    TTAATTAAAA TAGTCAATGT TGGATAAGCT TCTGACTTTG AANATAGTCC
    TTAGCAATAA CTATGACTCG GGTTTCTATA CGGCCTCGAN

AT1G02205.2

Model type
Protein coding
Short Description
Fatty acid hydroxylase superfamily
Curator Summary
Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.
Computational Description
ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 2658 Blast hits to 2653 proteins in 533 species: Archae - 0; Bacteria - 823; Metazoa - 248; Fungi - 388; Plants - 579; Viruses - 3; Other Eukaryotes - 617 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02210.1

Model type
Protein coding
Short Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1); Has 519 Blast hits to 519 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 519; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48030.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G21530.1); Has 404 Blast hits to 404 proteins in 167 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR