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54-5007-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5565587 [Map]; Strand: c
      • AT2G13380.1 - [+] show detail - transposable element gene
        Distance: 507; Region: intergenic
      • AT2G13390.1 - [+] show detail - transposable element gene
        Distance: -1411; Region: intergenic
    2. Chromosome: 4; Position: 3737294 [Map]; Strand: w
      • AT4G06622.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    3. Chromosome: 4; Position: 3749538 [Map]; Strand: w
      • AT4G06628.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-5007-1 - 5-prime edge 
    GTTTANGCTA NTNATATCNG GNTTTNCNAT TTCCTTNCTT GNGCNCNAGT 
    GTCCTGGNCT ANTGCCNNNT GAAGANGGCT CTGAAGCTTG TCATCCCANT 
    NTGCANTCTA CTGGCTGTGA TGGAGATACT CCGNCCTCTA GGTCGAGTGA 
    GGAGGTCNAN TGGTTGTNTG ATGATCGAGG NGAATACACT CGACCTCNAG 
    GTCGAGTGAA NCGATCNAGT GACNAGTCTG GTGATGGAGA TGATGGCACT 
    CGACCTCGGG GTCTAGTGGT GAGGTGAAGT GGNGATGTGC TCTACTCGAC 
    CTGGTNGNCN ANTGGTCTCT TGAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3951801 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1199; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 5381; Region: intergenic
    Flanking Genome Sequence: 54-5007-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAATTTAGCC TCTGTTTTTT GTCGTTATGA TGAAAAAACA ATTTAATTTT 
    TTAAAGCTNC CAGANCCGGC NAGTAAGGCA GGCNTGCGNT ATGGAGTCAA 
    ATATGACTTG ATGTCATGTG TATGATTGAG TATTAGAACT TAAACTGCAA 
    CCCGATCTTA AAAGCCTAAG TAGAGTTTCC TTGTTAGAAG ACACAAAGCC 
    AAAGACTCAT ATGGACTTAG GCTAAACCAT GAAAGCT

AT2G13380.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 6.1e-234 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT2G13390.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 4.2e-234 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06622.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
pseudogene of unknown protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR

AT4G06628.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 7.2e-125 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR