1. Home
  2. Mutant Lines
  3. 54-5011-1

54-5011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26120092 [Map]; Strand: c
      • AT5G65350.1 - [+] show detail - histone 3 11
        Distance: -267; Region: promoter
      • AT5G65360.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 54-5011-1 - 5-prime edge 
    ATCAAGGGTT CAATACAGTA AATGAAAATA TTCTGGTTTT CGGAACGGCA 
    CCAATTAAAA ACATTTCAAA TGGCGCCAAA AAAGTACAGC CAAAAATGAA 
    TGTTTCTGAT TGGTGGATTA AGTATCACGA GGATCGTCAA CACCTTATCC 
    AATACGCACC GTTGATTAGA TATCAAATCT AACGGATCAA AATCTCTCCT 
    TCCTTAGCAA AGTTTGAAAA CTCCCTCCAC ATTTTCATCT CCTTTTCCAC 
    ATAACCAACT CAACACTTTT CAATTTCTAT AACAATTTCG AGAAATCAAA 
    ACCAGAATTA ATAAAATTAA CCAGTTGATT CTTTCTATAT GGCTCGTACC 
    AAGCAGACTG CTAGAATATC CACCGGAGGA AAAGCTCCGA GGAAGCAATT 
    AGCGCCAAAA GCGGCGAGAC AATCTGCACC AGCAACGGGA GGAGTGAAGA 
    AGCCACACAG ATTCCGTCCA GGAACTGTTG CGTTGAGAGA TATTAGGAAA 
    TACCAAAAGA GTACCGAGAT TTTGATCAGA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26119636 [Map]; Strand: c
      • AT5G65350.1 - [+] show detail - histone 3 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-5011-1 - 3-prime edge 
    CCCTTGATTG TCAATTTCTC ATATTCAATG TGCCAAATTG ACAATTTCAC 
    ATATGATTAT TCAATATTCT AAACACTTGG GTTACATTAC ATCTTTCTAA 
    CTTTCCATTC TTTCGGAGAT CTTATAGAGT TATGCATAAG AGACAAGCAT 
    AATGGTGTAA CCGTGTGAGA ATTATGCCAA AGAAAACAAT TTAACAATAA 
    AATCACCGAA CGCAAAGCAT AATTATAAAA ATTCACTCTT GTGAACAAAA 
    TTAGTGTTCG CATTTAACAA TCTAGTAGAT TATTGTTTTG GATATAAAAA 
    TTAAACCACT TATAACTAGC ACTCAACAGA TAATAATAAA CGATTCATCA 
    TTCGTGAGAA TTAAATTCGA AAACAGACTT AATTAAGATT CATTGAGGCA 
    TTTCATCGAA CAACATAAAC GCAAAACCTA ATCCAACCCT AAAACACGAA 
    ATTAGGGAAA ACGAAAGATA TACATAAGCA TAACGATCAC AGTCTAGAGT 
    ACTTCAATCT CCTTCTTAAG CCCTCTCGCC TCTAATTCTC CTCGCCAATT 
    GAATATCCTT AGGCATGATA GTGACTCTCT TAGCATGAAT CGCGCAAAGA 
    TTGGTGTCTT CAAACAATCC AACGAGGTAT GCTTCAGCCG CTTCCTGAAG 
    TGCTGCGACG GCGCTGCTCT GGAAACGCAG ATCTGTTTTG AAATCCTGAG 
    CGATCTCACG AACCAAA

AT5G65350.1

Model type
Protein coding
Short Description
histone 3 11
Computational Description
histone 3 11 (HTR11); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65360.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR