Home
Mutant Lines
54-5024-1

54-5024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17935331 [Map]; Strand: w
- AT4G38240.1 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
  Distance: -6; Region: promoter
- AT4G38240.2 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
  Distance: -6; Region: promoter
- AT4G38240.3 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
  Distance: -30; Region: promoter
- AT4G38250.1 - [+] show detail - Transmembrane amino acid transporter family protein
  Distance: -71; Region: promoter

GCCGGGAGGG AGCTAGCTAA TAAGGAAGTT GTTTGAAACG GTGTCGTTCG 
TTATAACAAA AACGGTACCG TTTCCCAGTA AAAATGATAA GATGACCATT 
TCATTTCATC CATAAATAGA GCAGAGCTTC TTCCTCTGTA AATCTCTGAC 
AACAAACCAA AAAAGAGAGT CCACCAACTC TACACGCAAT TCATCCAATT 
ATCTTGCTGT CGCCATTCGC CAATATCCAT CCCCATCTTC TTCGATTTCT 
GAGATTCGGT CGAAAATCAT CAGATGGGTT TTCAGAACGA AGCTAGCTCC 
TCCTCTTATA CCCTTAAAAT ACCTCCACCG GCCAGAGAGG ACACGCCTCT 
TCTCGGCAAG GGACCTCCCC TCTCCAGCCA GTTTAAGACC TTCGCCAACG 
TCTTCATCGC TGTCGTCGGC GCTGGTGTTC TTGGTCTTCC TTACGCCTTC 
AAGCGAACCG GATGGCTCAT GGGTGTCCTC CTCCTCGTCT CCGTCTCTGT 
TTTGACCCAT CACTGTATGA TGCTTCTTGT CTATACCCGC CGCAAGCTCG 
ACTCTTTCAA TGCTGGCATC TCCAAGATCG GCTCTTTTGG TGACCTTGGA 
TTCGCCGTCT GCGGCTCCTT GGGGANGATC GNCGNTGACT TATTTATCAT 
TCTGTCTCAA GCTGGTTTTG NGTCNGATNT CTTATCTTAT CGGCNCTACT 
TTANCTAATC TNTCCNATCC TGAANCN

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17935215 [Map]; Strand: w
  - AT4G38240.1 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38240.2 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38240.3 - [+] show detail - alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, put...
    Distance: 0; Region: exon1 (5UTR)
  - AT4G38250.1 - [+] show detail - Transmembrane amino acid transporter family protein
    Distance: -187; Region: promoter
Flanking Genome Sequence: 54-5024-1 - 3-prime edge
```
CTCCCGGCGG CAAACACCAG AAGATCCACC GCTTTTGATC TGGTTGTTTG 
TCGTCGATAT GGCGAGGATC TCGTGTGACT TGAGATTTCT TCTCATCCCG 
GCAGCTTTCA TGTTCATCTA CATCCAGGTC AATCTATATC AGATGATCTC 
GCTTTTTGAA GTTGAAACTG AAATTGATTC CATCGCTGCA ACCTAAATCT 
GTCTGTAATT ATCCTCTCTT CTCTTCTCTA GATGAGGCTT TTCCAGACGC 
AATCACAGTA TGCAGATCGC CTCAGTTCCG CTGTGAGTTT CTACTTTTAC 
CACTGCCTTT TGTCTTTAGA CCATTGCTAC TAGTTCCTTT TGAAATCCCA 
TTTTTTGGCT CTTTACAAGC CCATGAACTA CTTTCAAGAA GAAGACACTA 
TCTGCACTAT TACACCATAT CATTGCCTTT GGTATTTCGA TTTTTTCCTG 
GTGTGTGATG AAGATC
```

AT4G38240.1

Model type: Protein coding
Short Description: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary: Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description: COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 453 Blast hits to 453 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38240.2

Model type: Protein coding
Short Description: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary: Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description: COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139); Has 453 Blast hits to 453 proteins in 90 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38240.3

Model type: Protein coding
Short Description: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative
Curator Summary: Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis.
Computational Description: COMPLEX GLYCAN LESS 1 (CGL1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 13 (InterPro:IPR004139).
Link: InterPro Scan - TAIR

AT4G38250.1

Model type: Protein coding
Short Description: Transmembrane amino acid transporter family protein
Computational Description: Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).
Link: InterPro Scan - TAIR